DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MED25 and med25

DIOPT Version :9

Sequence 1:NP_650854.1 Gene:MED25 / 42385 FlyBaseID:FBgn0038760 Length:863 Species:Drosophila melanogaster
Sequence 2:NP_001096266.1 Gene:med25 / 100124831 XenbaseID:XB-GENE-5830877 Length:805 Species:Xenopus tropicalis


Alignment Length:917 Identity:263/917 - (28%)
Similarity:382/917 - (41%) Gaps:221/917 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LADVVFVIEGSAINGAYINELKTNYILPTLEHFTTGSIDEREYLIAERFATLYGIVVYRTAANLL 72
            ::||||||||:|..|.|...|:.:|:||.:|:|..|...|.:: ..:...|.|.:||:.|.....
 Frog    12 ISDVVFVIEGTANLGPYFESLRKHYLLPAIEYFNGGPPAETDF-GGDYGGTQYSLVVFNTVDCAP 75

  Fly    73 EPVCSTYGPFLQPQKVMETIERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLDQTSVQRH 137
            |.....:.|.....:.::.::.:..:|||.|||:.:|||.:.|...|||..:.|:.:.||  .:.
 Frog    76 ESYVQCHAPTSSAYEFVQWLDSIRFMGGGGESCSLIAEGLSTALQLFDDFKKMREQIGQT--HKV 138

  Fly   138 CILICNSPPYQMPTTESWKYPGKSCEQLAALFNERKINLSIIAPRKMPVLFKLFMKADGDQPI-- 200
            ||||||||||.:|..||..|.|.:.|.|.....||.|:.|:|:|||:|.|..||.||   .|:  
 Frog   139 CILICNSPPYLLPAVESTTYSGYTTENLVQKIGERGIHFSVISPRKLPALRTLFEKA---MPVGL 200

  Fly   201 ---TSKNYAKNIRHLVLLKGYSLKERAPSPNSMAAQMAAPNAAQATVQQQQQQQQNQAGQQQQGQ 262
               ..|:|:::.||::|::|            |...:....:....:..:|...|          
 Frog   201 IEPQPKDYSQDPRHMILVRG------------MVLPVGGATSVPGVIPPKQPISQ---------- 243

  Fly   263 GMPMDTTPAQQQQQQQQQQQQQQQQGNPQQQVMNMNTMQQQQPGPNPPAGLLNPQQQQQLLQQQQ 327
             .|:...|.|                       ..|....|.|...||           .:|..|
 Frog   244 -PPLPVVPPQ-----------------------IANAPSHQLPPVQPP-----------YMQVPQ 273

  Fly   328 QNQFVSNQMQNQNF------QQNVGPGQNRWMYPNQPGQARPPFMQGAGNVGGVGQGGGMQQNPN 386
            ||...:.....|:.      |:|..|  ||:..||.                       .|..|.
 Frog   274 QNTLTTAHAAAQSAVEAAKNQKNNLP--NRFPLPNL-----------------------NQMPPT 313

  Fly   387 SALISRINAPPPNQTVTSLQQQQQQQAQQQQQQQQQAQQQQQQRMQMLSQQQMLNHQQLQQQQQL 451
            ||:.:..|.|||             .|..|.....:........|...||..::........   
 Frog   314 SAVGTPFNQPPP-------------PAMPQNTSVPKMVTSTASLMTPASQPSLVTTVTTGPG--- 362

  Fly   452 AQQQQQQQQGQQQQQVNPNAGNNMMPASN-AGNMSNPQQQQQQVGQQSNPQQQGNPQQQQQGNSQ 515
            ....|.||||.|||.|.|:     ||.:. ||.:..||..|.|:|....|    ..|....||  
 Frog   363 PAPVQLQQQGAQQQPVPPS-----MPITGAAGGVQAPQPSQPQIGTAQLP----CTQTPVNGN-- 416

  Fly   516 QEQASLREKIWTGVLEWSEKPKS----DQQKIPHTLQCTVCTNIKDGEPEIKAENWPPKLLMQLM 576
                  :...|:|||||.|||:|    :..|:..:|.|.|..|  .|| .:|.:.||.||:|||:
 Frog   417 ------KLLAWSGVLEWQEKPRSVSVDNNAKLTRSLPCQVYVN--PGE-NLKTDQWPQKLIMQLI 472

  Fly   577 PKHLVGNIGGQFLKDSKMVVFRPTPG--EALDSLAKMMTSGY-AGCVHFSSIPNSPACDLKVLIL 638
            |:.|:..:|..| ::|:||.|..|..  |:|..|.::|.||: ||||||   |::..|:::||:|
 Frog   473 PQQLLTTLGPLF-RNSRMVQFHFTNKDLESLKGLYRIMGSGFQAGCVHF---PHTTPCEVRVLML 533

  Fly   639 LYTPDRNAFLGFIPNNQAMFVERLRKVIQQKQHGNMQQQQQQQQM-------------------M 684
            ||:..:..|:|.|||:|:.||..:|:||...:...||:..||:.|                   .
 Frog   534 LYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQMQKIDQQRNMGAGQAVGTGNVPANTQAFLQ 598

  Fly   685 QQQGKSPMELQQQQQQQQQQ--------QQMQQDNSQQQHYNQFQLNMQMGG------------- 728
            :|.|..|:.....||.|.||        .|:...:.||:..|...:.:|...             
 Frog   599 KQPGALPVAQAVPQQMQGQQVAPGMPSISQVTMMDEQQRTQNLLHIRVQQPQQAASQAPPQATQT 663

  Fly   729 --GGPGGGPGPGPGGMPMQQN-----QMQMNMMQQQRMPLGVGVGVGVGPGGVPNPNLQQQLQQV 786
              ..||....|.||.|...||     |:: |::..|:.|     ...|.....|..::||..|.:
 Frog   664 TVQAPGQPQNPQPGAMLRPQNPGANPQLR-NLLLSQQPP-----QTSVPQTQQPLHHMQQAAQGM 722

  Fly   787 APNVAAMQQQQAQ---QQQQRMVRPMMSNNNPGLRQLLQHQTTPGNQFRPQMGGQNP----NQMG 844
            .|:.|..||.|.|   |||.::         ||  |.|.|| .|..|:..||..:.|    ..|.
 Frog   723 LPHQAMGQQMQHQAPGQQQLQL---------PG--QTLMHQ-APAQQWGNQMQQRAPIPGTLMMS 775

  Fly   845 AG--GPM 849
            ||  ||:
 Frog   776 AGPRGPV 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED25NP_650854.1 Med25_VWA 4..218 CDD:288159 79/214 (37%)
Med25 524..671 CDD:288130 64/153 (42%)
med25NP_001096266.1 Med25_VWA 9..220 CDD:402725 79/213 (37%)
Med25_SD1 223..398 CDD:402701 51/265 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 308..332 10/36 (28%)
Med25 419..566 CDD:402699 64/153 (42%)
PRK10263 <601..>714 CDD:236669 26/118 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..691 9/43 (21%)
LXXLL motif 691..695 1/4 (25%)
Med25_NR-box 703..805 CDD:402709 30/92 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4707
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 208 1.000 Inparanoid score I3603
OMA 1 1.010 - - QHG47953
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004644
OrthoInspector 1 1.000 - - otm48568
Panther 1 1.100 - - LDO PTHR12433
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4646
SonicParanoid 1 1.000 - - X6592
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.100

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