DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31213 and Abca2

DIOPT Version :10

Sequence 1:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:XP_063140674.1 Gene:Abca2 / 79248 RGDID:620238 Length:2442 Species:Rattus norvegicus


Alignment Length:2115 Identity:486/2115 - (22%)
Similarity:847/2115 - (40%) Gaps:514/2115 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NLT-YCQKYRLLLWKDIKLQLTNWVEL----------------------VMIIFLSALMPI---- 41
            |:| |.|     :|.:|..::.:::|.                      .|.:.|..|.|.    
  Rat   492 NVTHYAQ-----VWLNISAEIRSFLEQGRLQQHLHWLQQYVADLRLHPEAMNLSLDELPPALRLD 551

  Fly    42 FFSI--GTKVAKSIFPPDIEMEKSPGPKSVNTSLFVDLY--FTPNNGILEQLITQL--ANISEFK 100
            :||:  ||.:.:.:   |.....:.|.....:.:.||::  |.....|:...:.|.  .|::.|.
  Rat   552 YFSLPNGTALLQQL---DTIDNAACGWIQFMSKVSVDIFKGFPDEESIVNYTLNQAYQDNVTVFA 613

  Fly   101 SVEVFDTNSELYLQLMINRNAIGIAFPSEWYDIK---SCPEVLNLTIFMPLSIKRKDFK------ 156
            || :|.|..:            |...|...|.|:   |..|..|       .|:|..::      
  Rat   614 SV-IFQTRKD------------GSLPPHVHYKIRQNSSFTEKTN-------EIRRAYWRPGPNTG 658

  Fly   157 ---YFESGFLLLQERISKIFI--FFKNAGNGKI-PRVLMNHFPYPSYVPNHYAESAKAMTYMTLI 215
               ||..||:.:|:.|.:..|  |   .|:..: |...:..||||.|..:         .::.:|
  Rat   659 GRFYFLYGFVWIQDMIERAIINTF---VGHDVVEPGNYVQMFPYPCYTRD---------DFLFVI 711

  Fly   216 SFFLP-CITIA---------KYVVAEKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCLLIMI 270
            ...:| |:.|:         :::|||||...|.|:..||.:|::||:||:....:.|.:.:..:.
  Rat   712 EHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALT 776

  Fly   271 SIFSIGLIYEFSSLVCLMTIFLVYIHSLVLFAFFISSFFSRSLSAVVATILMYFSTALPFL---- 331
            :|...|.:...|.::.:.....||..:.::|.|.:|..:|::..|.....::||.:.:|::    
  Rat   777 AILKYGQVLMHSHVLIIWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAI 841

  Fly   332 --------IVGAENSSVAAQTAASIGLNSALFYILDSVAVMEMQSVGAQWYTIDNTASSG--YKL 386
                    |...|....:..:..:.||.|..|      |:.|:..||.||:|...:...|  :.|
  Rat   842 REEVAHDKITAFEKCIASLMSTTAFGLGSKYF------ALYEVAGVGIQWHTFSQSPVEGDDFNL 900

  Fly   387 SIVGYMLIMISI-----SWIELLICLYIEAVRTGEFEVPQPWSYPFQRRYWCPLRYGSSVFHQGA 446
            .:...||::.::     :|       |||||..|.:.:|:||.:|.|:.||    .||       
  Rat   901 LLAVTMLMVDTVVYGVLTW-------YIEAVHPGMYGLPRPWYFPLQKSYW----LGS------- 947

  Fly   447 LLPLAGKNS--EGNLPAAH-----------------------------PTRQPIIYLDDRTQENF 480
                 |:..  |.:.|.||                             ||..|::...|:..:.:
  Rat   948 -----GRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFEETRGMEEEPTHLPLVVCVDKLTKVY 1007

  Fly   481 QRVNISKKIGIEVRSLSKTFGFRNVVKDLFFNVYENEITALVGHKGSGKTTIIMMLCGILQPTTG 545
            :.   .||:.:...||               |:|||::.:.:||.|:||||.:.:|.|:..||:|
  Rat  1008 KN---DKKLALNKLSL---------------NLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSG 1054

  Fly   546 TVLINGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESNIYISKLG 610
            :..|.|:||.||....:.:||:||||:|:|..::..:|::|:||:|...:.|...|.:..|..|.
  Rat  1055 SATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMAQEEIRKEMDKMIEDLE 1119

  Fly   611 LVDSQKWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILM 675
            |.:.:......||.|.:|:||:|.|...||:.|:.|||::|:||..|..:...:.|.|.|||||:
  Rat  1120 LSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLILKYKPGRTILL 1184

  Fly   676 TTQQLEEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTLSCQMAP----------------- 723
            :|..::|.::|.|||||::.|::.|.|:..:||......|.|:....|                 
  Rat  1185 STHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAEPGTSQEPGMASSPSG 1249

  Fly   724 -----NSKADNLTDLVRLYMTTTTSPVFHGVDVSYKLPRSQIDR--FPEFFQQLEENKKSLNVVS 781
                 |.....::..:|.::.::........::||.||...:.:  |...|||||.:..:|::.|
  Rat  1250 RPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELSYILPSEAVKKGAFERLFQQLEHSLDALHLSS 1314

  Fly   782 FGVSDSTLDGIYL-------SLDYGQGS-SRLRGGADPGVNDKVEFGVQTDKAIRTKDRANN--S 836
            ||:.|:||:.::|       ||:..:.. ...|..|.||.........|.....|..:.|.:  |
  Rat  1315 FGLMDTTLEEVFLKVSEEDQSLENSEADVKESRKDALPGAEGLTAVESQAGNLARCSELAQSQAS 1379

  Fly   837 LVR-------------------------YQHQVDPPN--------ETILNTKTPINPIEIWRPID 868
            |..                         :.:..||.:        |.:.........:|.|    
  Rat  1380 LQSASSVGSARGDEGAGYTDGYGDYRPLFDNLQDPDSVSLQEAEMEALARVGQGSRKLEGW---- 1440

  Fly   869 REKGSCMAQWQAMFIKKKNYTASRALIFILILIIPLFYYIIVLGTAASEKCAHRTDKQPVLPLSL 933
               ...|.|:..:.:|:.:.....:......:::|.|:..:.:..|.|  .....|..|::....
  Rat  1441 ---WLKMRQFHGLLVKRFHCARRNSKALCSQILLPAFFVCVAMTVALS--VPEIGDLPPLVLSPS 1500

  Fly   934 DYYSY----DDMIILLEVDKQLYK------SEGEAYVQLVKEPATVESVDSIFSHLLKAP----- 983
            .|::|    .:.|.....:::.|:      :..:..|...:.|:.|.:     :.:||:|     
  Rat  1501 QYHNYTQPRGNFIPYANEERREYRLRLSPDASPQQLVSTFRLPSGVGA-----TCVLKSPANGSL 1560

  Fly   984 -PIIRRDIKRKYVCGASFNNASTITAWFNSDAFEHSAPIALNLVYNALGKA-----VFEDQDFSI 1042
             |::........:..|.|.::..:      ::|....|:: |.|......|     :..|:| |:
  Rat  1561 GPMLNLSSGESRLLAARFFDSMCL------ESFTQGLPLS-NFVPPPPSPAPSDSPLSPDED-SL 1617

  Fly  1043 LVNRGDL------HDFIWLNNASSMRRRYKRQ--------------------NDPD--------Y 1073
            |.....|      ..:.|   |.|:.|.....                    :.|.        .
  Rat  1618 LAWNTSLPPTAGPETWTW---APSLPRLVHEPVRCTCSAQGTGFSCPSSVGGHPPQMRVVTGDIL 1679

  Fly  1074 TDYSDYEIQEYDVVVKPN------SSSTSGQHNKSNPGD----DNIITVQMSIIEAASTLYNEKG 1128
            ||.:.:.:.||.:.....      .:.|.|...||.|..    ..::..::::...|..|||.||
  Rat  1680 TDITGHNVSEYLLFTSDRFRLHRYGAITFGNIQKSIPAPIGTRTPLMVRKIAVRRVAQVLYNNKG 1744

  Fly  1129 KRKQ-----------------------------------------------LFGTLIIITAYIAL 1146
            ....                                               |.||.::|..:|.:
  Rat  1745 YHSMPTYLNSLNNAILRANLPKSKGNPAAYGITVTNHPMNKTSASLSLDYLLQGTDVVIAIFIIV 1809

  Fly  1147 CLSI----FSIFVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAIYMGALTIAIYHF---- 1203
            .:|.    |.:|:..|:....|..|.:.|.....:|..::|.|.|.|.:......|.::.|    
  Rat  1810 AMSFVPASFVVFLVAEKSTKAKHLQFVSGCNPVIYWLANYVWDMLNYLVPATCCIIILFVFDLPA 1874

  Fly  1204 ----TIWYQVVVMLLLIGFACLPFVYLCSLLFSLPNIAFAGIFAILVMTGGMLFSFMYMLTL--- 1261
                |.:..|:.:.||.|::..|.:|..|..|.:|:.|:..:..|.:..|.......::|.|   
  Rat  1875 YTSPTNFPAVLSLFLLYGWSITPIMYPASFWFEVPSSAYVFLIVINLFIGITATVATFLLQLFEH 1939

  Fly  1262 -----ITDVNFTTVFAILPMYVGTFGLFKCLAWREYCNREVLPPIEELDCKFGNCNVFCACKPER 1321
                 :.:....:.|.|.|.|....||.: :|:.||.|        |...|.|.   |...|...
  Rat  1940 DKDLKVVNSYLKSCFLIFPNYNLGHGLME-MAYNEYIN--------EYYAKIGQ---FDKMKSPF 1992

  Fly  1322 TWMEVW----LLMVHCLVWFIFLWFSNFGY-----EIGYRFKPKLSNRIWHNNEKHIRVLDEERR 1377
            .|..|.    .:.|...|.|.......:.:     .:....||.         |..:.|..|.:|
  Rat  1993 EWDIVTRGLVAMTVEGFVGFFLTIMCQYNFLRQPQRLPVSTKPV---------EDDVDVASERQR 2048

  Fly  1378 VGLIPKYEHEDYPIIVDQVTKNYCRAK----NAVQLVSFAIRPGDTFGLLGAQGAGKTSIFQMIA 1438
            |   .:.:.::..:.::.:||.|...|    .||..:...:|||:.|||||..||||||.|:|:.
  Rat  2049 V---LRGDADNDMVKIENLTKVYKSRKIGRILAVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLT 2110

  Fly  1439 GETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGDNAPKYLTGRQLLRIHCLLHGVP-KDHIKAV 1502
            |:.|.:.|..:|.|||:.:.....:..:|:|||.|.....||.|:.|:::..|.|:| ||..:.|
  Rat  2111 GDESTTGGEAFVNGHSVLKDLLQVQQSLGYCPQFDALFDELTAREHLQLYTRLRGIPWKDEAQVV 2175

  Fly  1503 SEQMAIEFNFKDQL----DRPIHTYSGGKKRKLNIALA-IDSGSVLCLDDTNGSVDHATQRFIWR 1562
              :.|:|   |.:|    |:|..:||||.||||:.|:| |...:.:.||:....:|...:||:|.
  Rat  2176 --RWALE---KLELTKCADKPAGSYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWN 2235

  Fly  1563 KLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFIGSLQQVRSEVSNTIVIRLRVNPSDG 1627
            .:..:.::||.|:||:.||||..|||:|:|.:|.|.:..:||:|.:::...:..:|.:|...|  
  Rat  2236 LILDLIKTGRSVVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSS-- 2298

  Fly  1628 KLKRRFQQLIADMAEL----FPLATLHEALETCLIYHININVTTLANLFYQMEKIRNEGLLEDYS 1688
                   |.:.|:...    ||.|.|.|...|.:.|.:.....:||.:|.:||.:.....:||||
  Rat  2299 -------QNVKDVVRFFNRNFPEAMLKERHHTKVQYQLKSEHISLAQVFSKMEHVVGVLGIEDYS 2356

  Fly  1689 ITQVSLDEIY---------RILNDEEDPN-------LVDL--DSTHNSEVLEDIRDTTRDTTRGT 1735
            ::|.:||.::         .:...|.:|:       |:.|  .....:|:...:.|...|.   .
  Rat  2357 VSQTTLDNVFVNFAKKQSDNVEQQEAEPSTLPSPLGLLSLLRPRPAPTELRALVADEPEDL---D 2418

  Fly  1736 TRDTNLVSDEGIQKEKVKRKKVEEEDRDRQESTET 1770
            |.|..|:|             .|||......:|:|
  Rat  2419 TEDEGLIS-------------FEEERAQLSFNTDT 2440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 442/1876 (24%)
Abca2XP_063140674.1 None

Return to query results.
Submit another query.