DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and abca1a

DIOPT Version :10

Sequence 1:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:NP_001296394.1 Gene:abca1a / 558924 ZFINID:ZDB-GENE-031006-12 Length:2268 Species:Danio rerio


Alignment Length:2013 Identity:489/2013 - (24%)
Similarity:842/2013 - (41%) Gaps:487/2013 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWKDIKLQLTNWVE------LVMIIFLSALMPIFFSI---GTK---------VAKSIFPPDIEME 61
            :|::::.::.|::|      ||..:..:.....||:.   ||:         ::||     .|..
Zfish   420 MWEEMRPKIWNFMENSEEMDLVRTLLQNNASARFFNAKLSGTEWRVEDVSRFLSKS-----SEDT 479

  Fly    62 KSPGPKSVNTSLFVDLYFTPNNGILEQLITQLANISEFKSVEVFD--TNSELY----LQLMINRN 120
            :..|.......:|.:         .:|.|..::...|..:::..:  .|.|..    ::|:.:|.
Zfish   480 RPHGTAYTWREVFNE---------TDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRK 535

  Fly   121 A-IGIAFPSEWYDIKSCPEVLNLTIFMPL-SIKR------------------KDFKYFESGFLLL 165
            . .||.||....:....|..:|..|.|.: :::|                  :|.:|...||..|
Zfish   536 FWAGIVFPDMQSNTSDLPLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYL 600

  Fly   166 QERISKIFIFFKNAGNGKIPRVLMNHFPYPSYVPNHYAE--SAKAMTYMTLISFFLPCITIAKYV 228
            |:.|.. .|.....|:.:...|.:...|||.||.:.:..  |.....:|||...:...| |.|.|
Zfish   601 QDVIEH-GIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI-IIKGV 663

  Fly   229 VAEKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCLLIMISIFSI---------GLIYEFSSL 284
            |.|||...|..:..||..|.|.||:|:..|::.||:...:::.|..:         |:||.|.|.
Zfish   664 VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGVIYLFLSS 728

  Fly   285 VCLMTIFLVYIHSLVLFAFFISSFFSRSLSAVVATILMYFSTALPFLIVGAENSSV--AAQTAAS 347
            ..::||         :..|.||:.|||:..|.....::||:..||:::..|..:.|  .|:...|
Zfish   729 FAVVTI---------MQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQNYVGFGAKIVVS 784

  Fly   348 IGLNSALFYILDSVAVMEMQSVGAQWYTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAV 412
            :....|..:..:..|:.|.|.||.||..:.::.......::...:.:|:..|.:..::..|||||
Zfish   785 LLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFDSVLYAVMTWYIEAV 849

  Fly   413 RTGEFEVPQPWSYPFQRRYWCPLRYG--SSVFHQGALLPLAGK-NSEGNLPAAHPTR-QPIIYLD 473
            ..|::.:|:||.:||.:.|||..:.|  :||       |...| |:|.......|.. .|.:|: 
Zfish   850 FPGQYGIPRPWYFPFTKSYWCGEKCGWTTSV-------PSNRKENAEAVCIEEEPAHIDPGVYI- 906

  Fly   474 DRTQENFQRVNISKKIGIEVRSLSKTFGFRNVVKDLFFNVYENEITALVGHKGSGKTTIIMMLCG 538
                ||..::..:.|:.::    ..|.||           ||.:||:.:||.|:||||.:.:|.|
Zfish   907 ----ENLMKIYSNGKVAVD----GLTLGF-----------YEGQITSFLGHNGAGKTTTMSILTG 952

  Fly   539 ILQPTTGTVLINGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESN 603
            :..||:||..|.|.||.|:....:.:||:||||:|:|..::..:||:|::|:||.:..:...|..
Zfish   953 LFPPTSGTAYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSAEKVKSEME 1017

  Fly   604 IYISKLGLVDSQKWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEK 668
            ..:..|||...:...:.:||.|.||:||:|.|...||||::.|||::|:||..|..:...|.|.:
Zfish  1018 QIVMDLGLPHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR 1082

  Fly   669 HGRTILMTTQQLEEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTL------------SCQM 721
            .||||:::|..::|.:||.|||||::.|::.|.|:..:||....|.|.|            ||:.
Zfish  1083 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDFDLSASSCRT 1147

  Fly   722 APN----SK-------------------ADNLTDLVRLYMTTTTSPVFH-----------GVDVS 752
            :.:    ||                   :|:.::...:.::..::.:|.           |.:::
Zfish  1148 SSSTVSYSKGSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNVIFKHVPTARLVEDLGHEIT 1212

  Fly   753 YKLP--RSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGADPGVND 815
            |.||  .::...|.|.|.::::....|::.|:|:||:||:.|:|.:           ..|.||:.
Zfish  1213 YVLPYESAKDGAFVELFHEIDDRLTDLSISSYGISDTTLEEIFLKV-----------AEDCGVDA 1266

  Fly   816 KVEFGVQTDKAIRTKDRANNSLVRYQHQVDPPNETILNTKTPINPIEIWRPIDRE---------K 871
            :.     :|..:..:....::...:|..:.|..|...:    .|..| ..|..||         |
Zfish  1267 ET-----SDGTLPARRNRRHAFGDHQSCLKPFTEDDFD----FNDSE-GDPESRETDWLDGADGK 1321

  Fly   872 GSCMAQ-------------WQAMFI---KKKNYTASRAL--IFILI-----LIIPLFYYIIVLGT 913
            ||...:             |:.:..   .:|.:.|...|  :|:.|     ||:|.|        
Zfish  1322 GSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF-------- 1378

  Fly   914 AASEKCAHRTDKQPVLPLSLDYYSYDDMII------------LLEV--DKQLYK----------- 953
                      .|.|.|.|....|......|            ||:.  |...|.           
Zfish  1379 ----------GKYPSLALEPSMYEEQFTFISNDAPEDRHTNRLLDALKDSPAYTDQCTDGKNTAS 1433

  Fly   954 -----SEGEAYVQLVKEPATVESVDSIF----------SHLLKA--------------------P 983
                 .:||..|     |...||:::||          |.|.:.                    |
Zfish  1434 RSCPIKDGEWLV-----PEVTESIEAIFLNGNWSMENPSPLCECSCEGRKKMLPECPPGAGGLPP 1493

  Fly   984 PIIR------------RDIK----RKY--VCGASFNNASTITAWFN------------------- 1011
            |.|:            |:|.    :.|  :.|.|..|    ..|.|                   
Zfish  1494 PQIKVTHDETLQNLSGRNISDYLVKTYAQIIGKSLKN----KLWVNEFRYGGFSLGARNTQALPP 1554

  Fly  1012 ----SDAFEHSAPIALNLVYNALGKAVFEDQDFSI----LVNR--GDLHDF-----------IWL 1055
                :||..|..                  ..||:    ..:|  |.|..|           ||.
Zfish  1555 GDELTDAISHIR------------------SRFSLESGTAADRFLGSLSTFIRGLDTNNNVKIWF 1601

  Fly  1056 NN---------ASSMRRRYKRQNDPDYTDYSDYEIQEYDVVVKPNSSSTSGQHNKSNPGDDNIIT 1111
            ||         .:.|.....|.|.|...|.|.:.|..::..:                   |:..
Zfish  1602 NNKGWHSIGSFLNVMNNAVLRANLPPGLDRSKFGINAFNHPL-------------------NLTK 1647

  Fly  1112 VQMSIIEAASTLYNEKGKRKQLFGTLIIITAYIALCLSI----FSIFVTKERVEHFKMQQEIYGV 1172
            .|:|.:...:|..:            ::::..:...:|.    |.:|:.:|||...|..|.|.||
Zfish  1648 EQLSHVALMTTSVD------------VLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGV 1700

  Fly  1173 TLFYFWSTHFVGDFLIYAIYMGALTIAIYHFTIWYQ-----------VVVMLLLIGFACLPFVYL 1226
            ..|.:|..:||.|...|.:   ..|:.|..|..:.|           :.::|||.|::..|.:|.
Zfish  1701 QPFLYWLANFVWDMCNYIV---PATLVIIIFVCFQQEAYVSSTNLPVLALLLLLYGWSITPLMYP 1762

  Fly  1227 CSLLFSLPNIAFAGIFAILVMTG--GMLFSFMYML---TLITDVN--FTTVFAILPMYVGTFGLF 1284
            .|..|.:|:.|:..:.::.::.|  |.:.:|:..|   ..|..:|  ...||.|.|.:....||.
Zfish  1763 ASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLI 1827

  Fly  1285 KCLAWREYCNREVLPPIEELDCKFGNCNVFCACKPERTW----MEVWLLMVHCLVWFIFLWFSNF 1345
            ..:.     |:.:...:|    :||. |.|   :....|    ..::.:.:..:::|      :.
Zfish  1828 DMVK-----NQAMADALE----RFGE-NRF---RSPLAWDMVGKNLFAMAIEGVIFF------SI 1873

  Fly  1346 GYEIGYRFKPK---LSNRIWHNNEKHIRVLDEERRV----GLIPKYEHEDYPIIVDQVTKNYCR- 1402
            ...|.|||..|   ||.::....|:...|..|.:|:    |.....|       :.|:||.|.| 
Zfish  1874 TVLIQYRFCIKARSLSTKLKPIGEEDEDVARERQRILGGGGQTDILE-------LRQLTKVYKRK 1931

  Fly  1403 AKNAVQLVSFAIRPGDTFGLLGAQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVG 1467
            .|.||..:...|.||:.|||||..||||||.|:|:.|::.::.|..|:.|:|:....:.....:|
Zfish  1932 QKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLAGNSVLTEIDEVHQNMG 1996

  Fly  1468 FCPQGDNAPKYLTGRQLLRIHCLLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLN 1532
            :|||.|.....||||:.|..:.:|.|||:..:..|::....:......:|:...:||||..|||:
Zfish  1997 YCPQFDAINDLLTGREHLEFYAILRGVPEKEVCKVADWGIRKLGLMKYVDKAAGSYSGGNMRKLS 2061

  Fly  1533 IALAIDSG-SVLCLDDTNGSVDHATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVA 1596
            .|:|:..| .|:.||:....:|...:|.:|..:.::.:.||.|:||:.||||..|:|:|:|.:|.
Zfish  2062 TAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEGRSVVLTSHSMEECEALCTRMAIMVN 2126

  Fly  1597 GEMMFIGSLQQVRSEVSNTIVIRLRVNPSDGKLKRRFQQLIADMAELFPLATLHEALETCLIYHI 1661
            |....:||:|.::::..:...|.|||..:|.:|:...:.:..::    |.:||.|.....|.|.:
Zfish  2127 GRFRCLGSVQHLKNKFGDGYTIILRVAGADPRLEPVMEFIEREL----PGSTLKEKHRNMLQYQL 2187

  Fly  1662 NINVTTLANLFYQMEKIRNEGLLEDYSITQVSLDEIY-RILNDEED-PNLVDLDSTHNSEVLE 1722
            :.::|:||.:|..:.|.:.:..:||||::|.:||::: ....|:.| .:|.|:....|..|::
Zfish  2188 SSSLTSLARIFNILSKNKEQLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISMNKNDAVVD 2250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 463/1858 (25%)
abca1aNP_001296394.1 rim_protein 1..2233 CDD:130324 484/1994 (24%)

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