DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31213 and abca1a

DIOPT Version :9

Sequence 1:NP_001262752.1 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:NP_001296394.1 Gene:abca1a / 558924 ZFINID:ZDB-GENE-031006-12 Length:2268 Species:Danio rerio


Alignment Length:2013 Identity:489/2013 - (24%)
Similarity:842/2013 - (41%) Gaps:487/2013 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWKDIKLQLTNWVE------LVMIIFLSALMPIFFSI---GTK---------VAKSIFPPDIEME 61
            :|::::.::.|::|      ||..:..:.....||:.   ||:         ::||     .|..
Zfish   420 MWEEMRPKIWNFMENSEEMDLVRTLLQNNASARFFNAKLSGTEWRVEDVSRFLSKS-----SEDT 479

  Fly    62 KSPGPKSVNTSLFVDLYFTPNNGILEQLITQLANISEFKSVEVFD--TNSELY----LQLMINRN 120
            :..|.......:|.:         .:|.|..::...|..:::..:  .|.|..    ::|:.:|.
Zfish   480 RPHGTAYTWREVFNE---------TDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRK 535

  Fly   121 A-IGIAFPSEWYDIKSCPEVLNLTIFMPL-SIKR------------------KDFKYFESGFLLL 165
            . .||.||....:....|..:|..|.|.: :::|                  :|.:|...||..|
Zfish   536 FWAGIVFPDMQSNTSDLPLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYL 600

  Fly   166 QERISKIFIFFKNAGNGKIPRVLMNHFPYPSYVPNHYAE--SAKAMTYMTLISFFLPCITIAKYV 228
            |:.|.. .|.....|:.:...|.:...|||.||.:.:..  |.....:|||...:...| |.|.|
Zfish   601 QDVIEH-GIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI-IIKGV 663

  Fly   229 VAEKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCLLIMISIFSI---------GLIYEFSSL 284
            |.|||...|..:..||..|.|.||:|:..|::.||:...:::.|..:         |:||.|.|.
Zfish   664 VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGVIYLFLSS 728

  Fly   285 VCLMTIFLVYIHSLVLFAFFISSFFSRSLSAVVATILMYFSTALPFLIVGAENSSV--AAQTAAS 347
            ..::||         :..|.||:.|||:..|.....::||:..||:::..|..:.|  .|:...|
Zfish   729 FAVVTI---------MQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQNYVGFGAKIVVS 784

  Fly   348 IGLNSALFYILDSVAVMEMQSVGAQWYTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAV 412
            :....|..:..:..|:.|.|.||.||..:.::.......::...:.:|:..|.:..::..|||||
Zfish   785 LLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFDSVLYAVMTWYIEAV 849

  Fly   413 RTGEFEVPQPWSYPFQRRYWCPLRYG--SSVFHQGALLPLAGK-NSEGNLPAAHPTR-QPIIYLD 473
            ..|::.:|:||.:||.:.|||..:.|  :||       |...| |:|.......|.. .|.:|: 
Zfish   850 FPGQYGIPRPWYFPFTKSYWCGEKCGWTTSV-------PSNRKENAEAVCIEEEPAHIDPGVYI- 906

  Fly   474 DRTQENFQRVNISKKIGIEVRSLSKTFGFRNVVKDLFFNVYENEITALVGHKGSGKTTIIMMLCG 538
                ||..::..:.|:.::    ..|.||           ||.:||:.:||.|:||||.:.:|.|
Zfish   907 ----ENLMKIYSNGKVAVD----GLTLGF-----------YEGQITSFLGHNGAGKTTTMSILTG 952

  Fly   539 ILQPTTGTVLINGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESN 603
            :..||:||..|.|.||.|:....:.:||:||||:|:|..::..:||:|::|:||.:..:...|..
Zfish   953 LFPPTSGTAYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSAEKVKSEME 1017

  Fly   604 IYISKLGLVDSQKWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEK 668
            ..:..|||...:...:.:||.|.||:||:|.|...||||::.|||::|:||..|..:...|.|.:
Zfish  1018 QIVMDLGLPHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR 1082

  Fly   669 HGRTILMTTQQLEEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTL------------SCQM 721
            .||||:::|..::|.:||.|||||::.|::.|.|:..:||....|.|.|            ||:.
Zfish  1083 QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDFDLSASSCRT 1147

  Fly   722 APN----SK-------------------ADNLTDLVRLYMTTTTSPVFH-----------GVDVS 752
            :.:    ||                   :|:.::...:.::..::.:|.           |.:::
Zfish  1148 SSSTVSYSKGSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNVIFKHVPTARLVEDLGHEIT 1212

  Fly   753 YKLP--RSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGADPGVND 815
            |.||  .::...|.|.|.::::....|::.|:|:||:||:.|:|.:           ..|.||:.
Zfish  1213 YVLPYESAKDGAFVELFHEIDDRLTDLSISSYGISDTTLEEIFLKV-----------AEDCGVDA 1266

  Fly   816 KVEFGVQTDKAIRTKDRANNSLVRYQHQVDPPNETILNTKTPINPIEIWRPIDRE---------K 871
            :.     :|..:..:....::...:|..:.|..|...:    .|..| ..|..||         |
Zfish  1267 ET-----SDGTLPARRNRRHAFGDHQSCLKPFTEDDFD----FNDSE-GDPESRETDWLDGADGK 1321

  Fly   872 GSCMAQ-------------WQAMFI---KKKNYTASRAL--IFILI-----LIIPLFYYIIVLGT 913
            ||...:             |:.:..   .:|.:.|...|  :|:.|     ||:|.|        
Zfish  1322 GSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF-------- 1378

  Fly   914 AASEKCAHRTDKQPVLPLSLDYYSYDDMII------------LLEV--DKQLYK----------- 953
                      .|.|.|.|....|......|            ||:.  |...|.           
Zfish  1379 ----------GKYPSLALEPSMYEEQFTFISNDAPEDRHTNRLLDALKDSPAYTDQCTDGKNTAS 1433

  Fly   954 -----SEGEAYVQLVKEPATVESVDSIF----------SHLLKA--------------------P 983
                 .:||..|     |...||:::||          |.|.:.                    |
Zfish  1434 RSCPIKDGEWLV-----PEVTESIEAIFLNGNWSMENPSPLCECSCEGRKKMLPECPPGAGGLPP 1493

  Fly   984 PIIR------------RDIK----RKY--VCGASFNNASTITAWFN------------------- 1011
            |.|:            |:|.    :.|  :.|.|..|    ..|.|                   
Zfish  1494 PQIKVTHDETLQNLSGRNISDYLVKTYAQIIGKSLKN----KLWVNEFRYGGFSLGARNTQALPP 1554

  Fly  1012 ----SDAFEHSAPIALNLVYNALGKAVFEDQDFSI----LVNR--GDLHDF-----------IWL 1055
                :||..|..                  ..||:    ..:|  |.|..|           ||.
Zfish  1555 GDELTDAISHIR------------------SRFSLESGTAADRFLGSLSTFIRGLDTNNNVKIWF 1601

  Fly  1056 NN---------ASSMRRRYKRQNDPDYTDYSDYEIQEYDVVVKPNSSSTSGQHNKSNPGDDNIIT 1111
            ||         .:.|.....|.|.|...|.|.:.|..::..:                   |:..
Zfish  1602 NNKGWHSIGSFLNVMNNAVLRANLPPGLDRSKFGINAFNHPL-------------------NLTK 1647

  Fly  1112 VQMSIIEAASTLYNEKGKRKQLFGTLIIITAYIALCLSI----FSIFVTKERVEHFKMQQEIYGV 1172
            .|:|.:...:|..:            ::::..:...:|.    |.:|:.:|||...|..|.|.||
Zfish  1648 EQLSHVALMTTSVD------------VLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGV 1700

  Fly  1173 TLFYFWSTHFVGDFLIYAIYMGALTIAIYHFTIWYQ-----------VVVMLLLIGFACLPFVYL 1226
            ..|.:|..:||.|...|.:   ..|:.|..|..:.|           :.::|||.|::..|.:|.
Zfish  1701 QPFLYWLANFVWDMCNYIV---PATLVIIIFVCFQQEAYVSSTNLPVLALLLLLYGWSITPLMYP 1762

  Fly  1227 CSLLFSLPNIAFAGIFAILVMTG--GMLFSFMYML---TLITDVN--FTTVFAILPMYVGTFGLF 1284
            .|..|.:|:.|:..:.::.::.|  |.:.:|:..|   ..|..:|  ...||.|.|.:....||.
Zfish  1763 ASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLI 1827

  Fly  1285 KCLAWREYCNREVLPPIEELDCKFGNCNVFCACKPERTW----MEVWLLMVHCLVWFIFLWFSNF 1345
            ..:.     |:.:...:|    :||. |.|   :....|    ..::.:.:..:::|      :.
Zfish  1828 DMVK-----NQAMADALE----RFGE-NRF---RSPLAWDMVGKNLFAMAIEGVIFF------SI 1873

  Fly  1346 GYEIGYRFKPK---LSNRIWHNNEKHIRVLDEERRV----GLIPKYEHEDYPIIVDQVTKNYCR- 1402
            ...|.|||..|   ||.::....|:...|..|.:|:    |.....|       :.|:||.|.| 
Zfish  1874 TVLIQYRFCIKARSLSTKLKPIGEEDEDVARERQRILGGGGQTDILE-------LRQLTKVYKRK 1931

  Fly  1403 AKNAVQLVSFAIRPGDTFGLLGAQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVG 1467
            .|.||..:...|.||:.|||||..||||||.|:|:.|::.::.|..|:.|:|:....:.....:|
Zfish  1932 QKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLAGNSVLTEIDEVHQNMG 1996

  Fly  1468 FCPQGDNAPKYLTGRQLLRIHCLLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLN 1532
            :|||.|.....||||:.|..:.:|.|||:..:..|::....:......:|:...:||||..|||:
Zfish  1997 YCPQFDAINDLLTGREHLEFYAILRGVPEKEVCKVADWGIRKLGLMKYVDKAAGSYSGGNMRKLS 2061

  Fly  1533 IALAIDSG-SVLCLDDTNGSVDHATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVA 1596
            .|:|:..| .|:.||:....:|...:|.:|..:.::.:.||.|:||:.||||..|:|:|:|.:|.
Zfish  2062 TAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKEGRSVVLTSHSMEECEALCTRMAIMVN 2126

  Fly  1597 GEMMFIGSLQQVRSEVSNTIVIRLRVNPSDGKLKRRFQQLIADMAELFPLATLHEALETCLIYHI 1661
            |....:||:|.::::..:...|.|||..:|.:|:...:.:..::    |.:||.|.....|.|.:
Zfish  2127 GRFRCLGSVQHLKNKFGDGYTIILRVAGADPRLEPVMEFIEREL----PGSTLKEKHRNMLQYQL 2187

  Fly  1662 NINVTTLANLFYQMEKIRNEGLLEDYSITQVSLDEIY-RILNDEED-PNLVDLDSTHNSEVLE 1722
            :.::|:||.:|..:.|.:.:..:||||::|.:||::: ....|:.| .:|.|:....|..|::
Zfish  2188 SSSLTSLARIFNILSKNKEQLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISMNKNDAVVD 2250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_001262752.1 ABC2_membrane_3 32..>295 CDD:289468 71/311 (23%)
ABC_subfamily_A 491..708 CDD:213230 81/216 (38%)
drrA 498..796 CDD:130256 108/345 (31%)
ABC2_membrane_3 <1132..1285 CDD:289468 43/174 (25%)
CcmA 1391..1672 CDD:224054 94/282 (33%)
ABC_subfamily_A 1391..1609 CDD:213230 79/219 (36%)
abca1aNP_001296394.1 rim_protein 1..2233 CDD:130324 484/1994 (24%)
ABC_subfamily_A 904..1122 CDD:213230 85/237 (36%)
ABC_subfamily_A 1919..2139 CDD:213230 80/226 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

Return to query results.
Submit another query.