DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and abca12

DIOPT Version :10

Sequence 1:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:XP_686632.6 Gene:abca12 / 558335 ZFINID:ZDB-GENE-030131-9790 Length:5913 Species:Danio rerio


Alignment Length:1948 Identity:435/1948 - (22%)
Similarity:800/1948 - (41%) Gaps:414/1948 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNRNLTYCQKYRLLLWKDIKLQLTNWVELVMIIFLSA-----LMPIF-FSIGTKVAKSIFPPDIE 59
            |.|.:.......|..:.|:||..:.|:|....:..||     .:||. .|:.:...::.......
Zfish  4144 MTREIMRKSNSSLHQFGDLKLYASEWIESSSYVLQSANILTQTLPILKNSLNSPFVQNFIRTQTG 4208

  Fly    60 MEKSPGPKSVNTSLFVDLYFTPNNGILEQLIT---QLANISE---------FKSVEVFD------ 106
            ::.|....::|....:.:....|..|::|:.|   .:.|:|.         |.|.:..|      
Zfish  4209 IDVSGMSATLNQFSNMTVLLEKNKFIMDQITTLSVLMMNLSSCVNFDRYRGFNSTDELDKQAEKL 4273

  Fly   107 -TNSELYLQLMINRNAIGIAFPSEWYDIKSCPEVLNLTIFMPL-SIKRKD--------------- 154
             .|.|||..::..       .|.|  :..|.|..::.||.|.: ::.|.|               
Zfish  4274 AQNRELYASIIFK-------LPKE--NSSSLPPNIDYTIRMNIENVMRTDRARNPFWVKDAYISA 4329

  Fly   155 --FKYFESGFLLLQERISKIFIFFK--NAGNGKIPRVLMNHFPYPSYVPNHYAES-AKAMTYMTL 214
              .:.:..||:.|||.|.:..|..:  ||.:|  |.|.|..||||.|..:.|..| |.|.....:
Zfish  4330 TRTQRYSRGFVYLQESIERAIIEMQTGNAMDG--PAVQMQAFPYPCYYKDEYLNSIAFAFPMALM 4392

  Fly   215 ISFFLPCITIAKYVVAEKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCLLIMISIFSIGLIY 279
            ||:.|......|.:|.|:|......:..||.:...|:.||..:|...||:.::|:..|...|.|.
Zfish  4393 ISWVLFIAHFVKKLVHERELRLHEYMKMMGVNPISHFFAWLIESGAFLLVTVIILTIILKAGGIL 4457

  Fly   280 EFSSLVCLMTIFLVYIHSLVLFAFFISSFFSRSLSAVVATILMYFSTALPFLIV--GAENSSVAA 342
            ..|....|......|..|::..:|.:||||.::..|.::..|:|..:..||:::  ..:|.|.:.
Zfish  4458 PRSDGFVLFLYLCDYGFSVLAVSFLVSSFFDKTNIAGLSGSLIYVISFFPFIVLIHLEDNLSFSV 4522

  Fly   343 QTAASIGLNSALFYILDSVAVMEMQSVGAQWYTI------DNTASSGYKLSIVGYMLIMISISWI 401
            ::|.|:...:...|....:|..|.|..|.||..:      .:|:|.|:    :.::|::.|:  :
Zfish  4523 KSALSLFSPTCFSYASQYIARYEKQEEGIQWSNMYISPLAGDTSSFGW----LCWLLLIDSL--V 4581

  Fly   402 ELLICLYIEAVRTGEFEVPQPWSYPFQRRYW------C---PLRYGSSVFHQGALLPLAGKN--- 454
            ..:|.:||..|..|::.:..||.:|..:.:|      |   |.:.|..:.....:...:..|   
Zfish  4582 YFIIGIYIRMVFPGKYGIAVPWYFPVTKSFWTDMFSCCSKTPKKIGRGLLFTNMMQDQSSMNKSK 4646

  Fly   455 SEGNLPAAHPTRQPIIYLDDRTQENFQRVNISKKIGIEVRSLSKTFGFRNVVKDLFFNVYENEIT 519
            .:|:|.|             :.:|:|..:    .:|:.:..|:||:|.||.|.:|..:.||..:|
Zfish  4647 GKGSLVA-------------KGEEDFSGL----PVGVSLYGLTKTYGKRNAVDNLNLSFYEGHVT 4694

  Fly   520 ALVGHKGSGKTTIIMMLCGILQPTTGTVLINGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHI 584
            :|:||.|:||||.:.:|.|:..||.||:.:.|.|:.......:..:|:|.|:.|:|..::.::|:
Zfish  4695 SLLGHNGAGKTTTMSLLTGLFAPTVGTIEVYGMDMQMFIDDVRKEMGVCMQYDVLFDHLTTKEHL 4759

  Fly   585 YFFSRVKG--YNKTEA-------MMESNIYISKLGLVDSQKWDAMRLSPGNQRRLSLACALCAGS 640
            ..::::|.  :.|.|.       :||::::..:...|.:       ||.|.:|:||::.|...||
Zfish  4760 LLYAQIKAPHWTKQEVKEQVHKILMETDMHAHRHKRVGT-------LSGGMKRKLSISIAFIGGS 4817

  Fly   641 KVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILMTTQQLEEGEILADRIAIMNDGQILCYGTLG 705
            ::::.|||::|:||..|..:...:.:.|..|||:::|..|:|.|:|:||||.:..|.:.|.|:..
Zfish  4818 RLVVLDEPTTGVDPCSRRSIWDIIIQHKQERTIILSTHHLDEAEVLSDRIAFLERGGLKCCGSPF 4882

  Fly   706 YLKQLPFTSYTLSCQM---APNSKA----DNLTDLVRLYMTTTTSPVFHGVDVSYKLP---RSQI 760
            |||......|.|:...   ..:||.    :.|.|.:..::...........|:.|.||   ....
Zfish  4883 YLKDKLAKGYNLTLTKKVETADSKEKFDYEKLRDFIHSHLPDARQKDREMGDLVYALPPYTPQNA 4947

  Fly   761 DRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGADPGVND--KVEFGVQT 823
            ..:......|::|...|::..:|:||:||:.::|.|        .|...:|..::  .|...|..
Zfish  4948 SEYHSLLNSLDQNLDKLHLGCYGISDTTLEEVFLQL--------TRDDLEPKESETWSVSESVIE 5004

  Fly   824 DKAIRTKDRAN---NSLVRYQHQVDPPNETILNTKTPINPIEIWRPIDREKGSCMAQWQAMFIKK 885
            :....::|..:   ||:...:......|.|:......:..: |...:.|...| ...|:.:|.: 
Zfish  5005 NDMFASRDSLSEDCNSMYLGEKASLTGNSTVRGFALGVQRV-IAMLLKRVHHS-RRDWKGLFSQ- 5066

  Fly   886 KNYTASRALIFILILIIPLFYYIIVLGTAASEKCAHRTDKQ--PVLPLSLDYYSYDDMIILLEVD 948
                          :::|:.:.|..:|..:.     ::|.|  |.:.||...|..|:......  
Zfish  5067 --------------VLLPVLFVIAAMGLGSI-----KSDLQHFPEIVLSPALYHVDEQYAFFS-- 5110

  Fly   949 KQLYKSEGEAYVQLVKEPATVESVDSIFSH--------------LLKAPPIIRRDIKRKYVCGAS 999
                          .:.|.|...||::.|:              :.|..|...   .:.:|.|. 
Zfish  5111 --------------NQNPNTSRLVDTMMSYPGIDHVCMTDPTDPVCKGRPSTG---SQTWVSGG- 5157

  Fly  1000 FNNASTITAWFNSDAFEHSAPI-----------ALNLVYNALGKAVFEDQDFSILVNRGDLHD-- 1051
             |:::|.|....|:..: |.|.           :..:|||..|..:   :::.:......:.|  
Zfish  5158 -NSSATFTTCKCSNQVQ-SCPAQGYDPPRKRCPSSQIVYNLTGVNI---ENYLLATANNFIRDRY 5217

  Fly  1052 ---------------------------FIWLNN---------ASSMRRRYKRQNDPDYTDYSDYE 1080
                                       .:|.|:         .:|:...:.|.:.|..       
Zfish  5218 GGWEFGKPLPIDLKMDMLDVPANRTLSKVWYNSEGHHSMPAYLNSLNNFFLRSSLPPE------- 5275

  Fly  1081 IQEYDVVVKPNSSSTSGQHNKSNPGDDNIITVQMSIIEAASTLYNEKGKRKQLFGTLIIITAYIA 1145
             :.|...:..:|....||..    .:|.::...:||:.|                 |.::|.|..
Zfish  5276 -KRYQYAISISSHPYPGQVQ----DEDLMVGGLVSILVA-----------------LCVLTGYSI 5318

  Fly  1146 LCLSIFSIFVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAI--YMGALTIAIYHFTIWYQ 1208
            :..| |.|:..:|.....|..|:|.|::..::|..:|..|..:|.|  .:..:.:|.:....:.:
Zfish  5319 MTAS-FVIYEVQEHHTGSKRLQQISGISEPFYWIINFFYDMALYMIPVVLSVVMVAAFQLPAFTE 5382

  Fly  1209 ------VVVMLLLIGFACLPFVYLCSLLFSLPNIAFAGIFAI--------LVMTGGMLFSFMYML 1259
                  |.::|:|.||:..|::||.|.:|....:||.|...|        ::.|     |.:|.|
Zfish  5383 RQNLAAVTLLLVLFGFSTFPWMYLLSAMFKDTEMAFIGYVCINLFISVNTIIST-----SIIYFL 5442

  Fly  1260 TLITD---------VNFTTVFAILPMYVGTFGLFKCLAWREYCNREVLPPIEELDCKFGNCNVFC 1315
            ..:..         ...:.:|.:.|.:                             .|||..:..
Zfish  5443 GQLNQNDQSIQNIYQTMSNIFLVFPQF-----------------------------SFGNGLMEL 5478

  Fly  1316 ACKPERTWMEVWLL------------MVHCLVW-FIFLWFSNFGYEIGYRFKPKLSNRI------ 1361
            |    |..|:|.:|            .:..|.| ||.::...|   |.:..:..|:..:      
Zfish  5479 A----RVDMQVQILSGFGVDAYKNPFSMDVLGWMFISMFLQGF---ICFTLRLLLNKTLLRKVRR 5536

  Fly  1362 ---WHNN-------EKHIRVLDEERRVGL------IPKYEHEDYPIIVDQVTKNYCRAKNAVQLV 1410
               |..|       .:...||||..|||.      |.:..|      :.:|.:|:.:...||:.:
Zfish  5537 LFCWKRNAVQSYSPNEDEDVLDERLRVGRGDASSDILQVNH------LTKVYQNFSKRVQAVKSL 5595

  Fly  1411 SFAIRPGDTFGLLGAQGAGKTSIFQMIAGETSMSHGNIYVR---GHSL------REHRNAAKMEV 1466
            |..|..|:.|||||..|||||:.|:|:.|:.|.|.|:..:|   |..:      ||..|     :
Zfish  5596 SVGIPAGECFGLLGVNGAGKTTTFKMLTGDISPSGGSAKIRDIDGRMVDIIDCRREGIN-----I 5655

  Fly  1467 GFCPQGDNAPKYLTGRQLLRIHCLLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKL 1531
            |:|||.|.....|||.:.|..:..:.|:.|..|..|...:..:.......:....:||.|.:|||
Zfish  5656 GYCPQVDALDDLLTGEEHLYFYARIRGISKRDISQVVNYLLKKLQLNYHRNNTSESYSCGTRRKL 5720

  Fly  1532 NIALA-IDSGSVLCLDDTNGSVDHATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLV 1595
            :.||| |.:..:|.||:.:..:|..::|.:|:.:.........|:||:.||||..|:|:|:|.:|
Zfish  5721 STALALIGNPQILLLDEPSSGMDPRSKRHLWKIISEQVMGKCAVVLTSHSMEECEALCTRLAIMV 5785

  Fly  1596 AGEMMFIGSLQQVRSEVSNTIVIRLRVNPS--DGKLKRRFQQLIADMAELFPLATLHEALETCLI 1658
            .|:...:||||.:::...:...:::.:..:  |..:...|.|      :.||...|.:.....:.
Zfish  5786 KGQFRCLGSLQHIKNRFGSGFTVKMYLTGASYDVDMISNFMQ------QNFPGTCLKDNHSNMVE 5844

  Fly  1659 YHININVTTLANLFYQMEKIRNEGLLEDYSITQVSLDEIY-RILNDEEDPNLVDLDSTHNSEV 1720
            ||:.:....:|::|..:|..:....::.:|::|.:|||:: .....:.|.:  .|::|..|::
Zfish  5845 YHVPVAPGGVASIFSLLESNKTVLQIKHFSVSQTTLDEVFINFATAKVDTD--GLEATEGSDI 5905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 403/1781 (23%)
abca12XP_686632.6 rim_protein 4..>93 CDD:130324
COG5412 <2412..2813 CDD:444167
rim_protein 4105..5897 CDD:130324 432/1938 (22%)
Blue background indicates that the domain is not in the aligned region.

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