DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and Abca3

DIOPT Version :9

Sequence 1:NP_001262752.1 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:XP_006246101.1 Gene:Abca3 / 302973 RGDID:1307174 Length:1704 Species:Rattus norvegicus


Alignment Length:1917 Identity:474/1917 - (24%)
Similarity:818/1917 - (42%) Gaps:433/1917 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QKYRLLLWKDIKLQLTNWVELVMIIFLSALMPIFFS-----IGTKVAKSIFP-----PDIEMEKS 63
            ::.||||||:..|:...    |::..|...:|:.||     :..|:.....|     ||..:::.
  Rat     5 RQLRLLLWKNYTLKKRK----VLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPDQHIQEL 65

  Fly    64 PGPKSVNTSLFV---------DLYFTPNNGILEQLITQLANISEFKSVEVFDTNSELYLQLMINR 119
            |        ||.         :|.:.|::....:.||:... .||                ||..
  Rat    66 P--------LFFSFPPPGGSWELAYVPSHSDAARTITEAVR-REF----------------MIKM 105

  Fly   120 NAIGIAFPSEW-----YDIKSCPEVLNLTIF----------MPLSIK--------RKDFKYFESG 161
            ...|.:...::     ||..| ..||...:|          :||:::        |:::.:.::|
  Rat   106 RVHGFSSEKDFEDYVRYDNHS-SNVLAAVVFEHTFNHSKDPLPLAVRYHLRFSYTRRNYMWTQTG 169

  Fly   162 FLLLQE----RISKIFIFFKNAG-------NGKIP------------------------------ 185
            .|.|:|    ..:.:|..|.:.|       :|..|                              
  Rat   170 NLFLKETEGWHTASLFPLFPSPGPREPSSPDGGEPGYIREGFLAVQHAVDKAIMHYHANASAHQL 234

  Fly   186 ----RVLMNHFPYPSYVPNHYAESAK-AMTYMTLISFFLPCITIAKYVVAEKERHQKAVLTAMGF 245
                .|:...||:|.|:.:.:..:.: .:..:.::||....:||.:.||.|||:..|..:..||.
  Rat   235 FQKLTVITKRFPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGL 299

  Fly   246 SNSIHWLAWYTKSMLLLLLCLLIMISIFSIGLIYEFS-------SLVCLMTIFLVYIHSLVLFAF 303
            |:.:||.||:...:|..|:.:..|..:|.:.:..:.:       |||  :...|.:..|.:.|:|
  Rat   300 SSWLHWSAWFLMFLLFSLIVVSFMTLLFCVKVKKDIAVLSNSDPSLV--LAFLLCFAISSISFSF 362

  Fly   304 FISSFFSRSLSAVVATILMYFSTALPFLIVGAE-NSSVAAQTAASIGL-NSALFYILDSVAVMEM 366
            .:|:|||::..|......:||.|..|:..|... |....:|...|..| |.|:......:...|.
  Rat   363 MVSTFFSKANMAATVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEA 427

  Fly   367 QSVGAQW------YTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAVRTGEFEVPQPWSY 425
            :..|.||      ..:|:....|..|.    ||::.|:  :..|:..|:|||..|:|.|||||.:
  Rat   428 KGTGIQWCDLLNPVNVDDDFCFGQVLG----MLLLDSV--LYGLVTWYVEAVFPGQFGVPQPWYF 486

  Fly   426 PFQRRYWCPLRYGSSVFHQGALLPLAGKNSEGNLP-AAHPTRQPIIYLDDRTQENFQRVNISKKI 489
            .....|||           |....:.||..||..| .|..|            |.|:........
  Rat   487 FLMPSYWC-----------GNPRTVVGKEEEGGDPEKAFRT------------EYFEAEPEDLAA 528

  Fly   490 GIEVRSLSKTFGFRNV----VKDLFFNVYENEITALVGHKGSGKTTIIMMLCGILQPTTGTVLIN 550
            ||:::.|||.|...|.    ::||..|:||.:||.|:||.|:||||.:.||.|:..||:|...|.
  Rat   529 GIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSMLTGLFPPTSGHAYIR 593

  Fly   551 GYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESNIYISKLGLVDSQ 615
            ||:|..:....:.|||:||||.|:|..::..:|:||::::||.:..:...|....:..|||.|.:
  Rat   594 GYEISQDMVQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSVQKCPEEVKQMLHTLGLEDKR 658

  Fly   616 KWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILMTTQQL 680
            ...:..||.|.:|:|::..||.|||||::.|||:||:|.:.|..:...||::|..||:|:||..:
  Rat   659 DSRSKFLSGGMKRKLAIGIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQQKSDRTVLLTTHFM 723

  Fly   681 EEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTLSCQMAPNSKADNLTDLVRLYMTTTTSPV 745
            :|.::|.|||||:..|::.|.|:..:|||.....|.::....|:...:.::.||..::.......
  Rat   724 DEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEGISQLVHHHVPNAMLES 788

  Fly   746 FHGVDVSYKLPRSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGAD 810
            ..|.::|:.||:....||...|.:||:.:|.|.:.|||.|.:|::.::|                
  Rat   789 HAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFL---------------- 837

  Fly   811 PGVNDKVEFGVQTDKAIRTKDRANNSLVRYQHQ---------------VDPPN---------ETI 851
                 :|...|.|...|:.   .....::|||:               :||.|         |.:
  Rat   838 -----RVGKLVDTSMDIQA---IQLPALQYQHERRASDWALDSNLCGVMDPTNGIGALIEEEEVL 894

  Fly   852 --LNTKTPINPIEIWRPIDREKGSCMAQWQAMFIKKKNYTASRALIFILILIIPLFYYIIVLGTA 914
              |||...::..:.|               |||:||..|:.....:....:::|:....:.|   
  Rat   895 VKLNTGLALHCQQFW---------------AMFLKKAAYSWREWRMVAAQILVPVTCLTLAL--- 941

  Fly   915 ASEKCAHRTDKQPVLPLSLDYYS--YDDMIILLEVDKQLYKSEGEAYVQLVKEPATVESVDSIFS 977
                            |:::|.|  :||..:.|.:::.     |...|.. ..|.|......:..
  Rat   942 ----------------LAINYTSEIFDDPPLKLSLNEY-----GTTVVPF-SVPGTSRLGQQLSE 984

  Fly   978 HL---LKA----PPIIRRDIK-----RKYVCGASFN-------------NASTITAWFNSDAFEH 1017
            ||   |:|    |..:..|::     |..|.|..||             ..:.:||.||:.|: |
  Rat   985 HLRDMLQAERQEPREVLGDLEEFLVFRASVEGGGFNERCLVATSFKDSGERTVVTALFNNQAY-H 1048

  Fly  1018 SAPIALNLVYNALGKAVFEDQDFSILVNRGDLHDFIWLNNASSMRRRYKRQNDPDYTDYSDYEIQ 1082
            |...||.:|.|.|         |.:|..                             ..:..||.
  Rat  1049 SPATALAIVDNLL---------FKLLCG-----------------------------PRASIEIS 1075

  Fly  1083 EYDVVVKPNSSSTSGQHNKSNPGDDNIITVQMSIIEAASTLYNEKGKRKQLFGTLIIITAYIALC 1147
            .|     |...||                     ::.|...:||..|...:...|:|..|::|  
  Rat  1076 NY-----PQPRST---------------------LQVAKDQFNEGRKGFDIALNLLIAMAFLA-- 1112

  Fly  1148 LSIFSIFVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAIYMGALTIAIYHFTI------- 1205
             |.|||....||....|..|.:.||.:..||.:..:.|.:.:.:....|.:....|.:       
  Rat  1113 -STFSILAVSERAVQAKHVQFVSGVHVATFWLSALLWDLISFLVPSLLLLVVFRAFDVHAFTRDG 1176

  Fly  1206 -WYQVVVMLLLIGFACLPFVYLCSLLFSLPNIAFAGIFAILVMTGGMLFSFMYMLTL----ITDV 1265
             ...::::|:|.|:|.:|.:||.|..||..:.|:..:....:::|...|..:.::.:    :.::
  Rat  1177 HMADLLLLLMLYGWAIIPLMYLLSFFFSAASTAYTRLTIFNILSGIATFIVVTIMRIPAVKLEEL 1241

  Fly  1266 NFTT--VFAILP-----MYVGTFGLFKCLAWREYC-NREVLPPIEELDCKFGNC----NVFCACK 1318
            :.|.  ||.:||     |.|..|  ::....|.|| :.||....    ||..|.    |.:....
  Rat  1242 SRTLDHVFLVLPNHCLGMAVSNF--YENYETRRYCTSSEVATHY----CKKYNIQYQENFYAWST 1300

  Fly  1319 P------------ERTWMEVWLLMVHCLVWFIFLWFSNFGYEIGYRFKPKLSNRIWHNNEKHIR- 1370
            |            ...::.:..|:...|:|.:..:...|             .|.|...|...| 
  Rat  1301 PGIGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFVCAF-------------RRRWTLAELQNRT 1352

  Fly  1371 --------VLDEERRVGLIPKYEHE-DYPIIVDQVTKNYCRAKN--AVQLVSFAIRPGDTFGLLG 1424
                    |.||..|| |:|..:.. |.|:|:::::|.|.:...  ||..:|.|::.|:.|||||
  Rat  1353 SVLPEDQDVADERSRV-LVPSLDSMLDTPLIINELSKVYDQRAPLLAVDRISLAVQKGECFGLLG 1416

  Fly  1425 AQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGDNAPKYLTGRQLLRIHC 1489
            ..|||||:.|:|:.||.:::.|:.:|.|:|:.......:..:|:|||.|....::|||::|.::.
  Rat  1417 FNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYA 1481

  Fly  1490 LLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLNIALA-IDSGSVLCLDDTNGSVD 1553
            .|.|:|:..|.|..|........:...::.:.|||||.||||:..:| |...:|:.||:.:..:|
  Rat  1482 RLRGIPERLIDACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546

  Fly  1554 HATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFIGSLQQVRSEVSNTIVI 1618
            ...:|.:|..:...:.||:.:::|:.||||..|:|:|:|.:|.|:...:||.|.::|:..:...:
  Rat  1547 PVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSL 1611

  Fly  1619 RLRVNPSDGKLKRRFQQLIADMAEL----FPLATLHEALETCLIYHININVTTLANLFYQMEKIR 1679
            :.:|. |:||     |:::.:....    ||.:.|.:..:..:.||:.....:.|.:|..:||.:
  Rat  1612 QAKVR-SEGK-----QEVLEEFKAFVDLTFPGSVLEDEHQDMVHYHLPGCDLSWAKVFGILEKAK 1670

  Fly  1680 NEGLLEDYSITQVSLDEIYRILNDEEDPNLVD 1711
            .:..::|||::|:||::::......:.|...|
  Rat  1671 EKYGVDDYSVSQISLEQVFLSFAHLQPPTTED 1702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_001262752.1 ABC2_membrane_3 32..>295 CDD:289468 68/357 (19%)
ABC_subfamily_A 491..708 CDD:213230 87/220 (40%)
drrA 498..796 CDD:130256 108/301 (36%)
ABC2_membrane_3 <1132..1285 CDD:289468 40/171 (23%)
CcmA 1391..1672 CDD:224054 86/287 (30%)
ABC_subfamily_A 1391..1609 CDD:213230 74/220 (34%)
Abca3XP_006246101.1 rim_protein <206..1699 CDD:130324 426/1681 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342208
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X215
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.960

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