DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and Abca3

DIOPT Version :10

Sequence 1:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:NP_001382963.1 Gene:Abca3 / 302973 RGDID:1307174 Length:1704 Species:Rattus norvegicus


Alignment Length:1917 Identity:474/1917 - (24%)
Similarity:818/1917 - (42%) Gaps:433/1917 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QKYRLLLWKDIKLQLTNWVELVMIIFLSALMPIFFS-----IGTKVAKSIFP-----PDIEMEKS 63
            ::.||||||:..|:...    |::..|...:|:.||     :..|:.....|     ||..:::.
  Rat     5 RQLRLLLWKNYTLKKRK----VLVTVLELFLPLLFSGILIWLRLKIQSENVPNATVYPDQHIQEL 65

  Fly    64 PGPKSVNTSLFV---------DLYFTPNNGILEQLITQLANISEFKSVEVFDTNSELYLQLMINR 119
            |        ||.         :|.:.|::....:.||:... .||                ||..
  Rat    66 P--------LFFSFPPPGGSWELAYVPSHSDAARTITEAVR-REF----------------MIKM 105

  Fly   120 NAIGIAFPSEW-----YDIKSCPEVLNLTIF----------MPLSIK--------RKDFKYFESG 161
            ...|.:...::     ||..| ..||...:|          :||:::        |:::.:.::|
  Rat   106 RVHGFSSEKDFEDYVRYDNHS-SNVLAAVVFEHTFNHSKDPLPLAVRYHLRFSYTRRNYMWTQTG 169

  Fly   162 FLLLQE----RISKIFIFFKNAG-------NGKIP------------------------------ 185
            .|.|:|    ..:.:|..|.:.|       :|..|                              
  Rat   170 NLFLKETEGWHTASLFPLFPSPGPREPSSPDGGEPGYIREGFLAVQHAVDKAIMHYHANASAHQL 234

  Fly   186 ----RVLMNHFPYPSYVPNHYAESAK-AMTYMTLISFFLPCITIAKYVVAEKERHQKAVLTAMGF 245
                .|:...||:|.|:.:.:..:.: .:..:.::||....:||.:.||.|||:..|..:..||.
  Rat   235 FQKLTVITKRFPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGL 299

  Fly   246 SNSIHWLAWYTKSMLLLLLCLLIMISIFSIGLIYEFS-------SLVCLMTIFLVYIHSLVLFAF 303
            |:.:||.||:...:|..|:.:..|..:|.:.:..:.:       |||  :...|.:..|.:.|:|
  Rat   300 SSWLHWSAWFLMFLLFSLIVVSFMTLLFCVKVKKDIAVLSNSDPSLV--LAFLLCFAISSISFSF 362

  Fly   304 FISSFFSRSLSAVVATILMYFSTALPFLIVGAE-NSSVAAQTAASIGL-NSALFYILDSVAVMEM 366
            .:|:|||::..|......:||.|..|:..|... |....:|...|..| |.|:......:...|.
  Rat   363 MVSTFFSKANMAATVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGKFEA 427

  Fly   367 QSVGAQW------YTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAVRTGEFEVPQPWSY 425
            :..|.||      ..:|:....|..|.    ||::.|:  :..|:..|:|||..|:|.|||||.:
  Rat   428 KGTGIQWCDLLNPVNVDDDFCFGQVLG----MLLLDSV--LYGLVTWYVEAVFPGQFGVPQPWYF 486

  Fly   426 PFQRRYWCPLRYGSSVFHQGALLPLAGKNSEGNLP-AAHPTRQPIIYLDDRTQENFQRVNISKKI 489
            .....|||           |....:.||..||..| .|..|            |.|:........
  Rat   487 FLMPSYWC-----------GNPRTVVGKEEEGGDPEKAFRT------------EYFEAEPEDLAA 528

  Fly   490 GIEVRSLSKTFGFRNV----VKDLFFNVYENEITALVGHKGSGKTTIIMMLCGILQPTTGTVLIN 550
            ||:::.|||.|...|.    ::||..|:||.:||.|:||.|:||||.:.||.|:..||:|...|.
  Rat   529 GIKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSMLTGLFPPTSGHAYIR 593

  Fly   551 GYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESNIYISKLGLVDSQ 615
            ||:|..:....:.|||:||||.|:|..::..:|:||::::||.:..:...|....:..|||.|.:
  Rat   594 GYEISQDMVQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSVQKCPEEVKQMLHTLGLEDKR 658

  Fly   616 KWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILMTTQQL 680
            ...:..||.|.:|:|::..||.|||||::.|||:||:|.:.|..:...||::|..||:|:||..:
  Rat   659 DSRSKFLSGGMKRKLAIGIALIAGSKVLMLDEPTSGMDAVSRRAIWDLLQQQKSDRTVLLTTHFM 723

  Fly   681 EEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTLSCQMAPNSKADNLTDLVRLYMTTTTSPV 745
            :|.::|.|||||:..|::.|.|:..:|||.....|.::....|:...:.::.||..::.......
  Rat   724 DEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEGISQLVHHHVPNAMLES 788

  Fly   746 FHGVDVSYKLPRSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSLDYGQGSSRLRGGAD 810
            ..|.::|:.||:....||...|.:||:.:|.|.:.|||.|.:|::.::|                
  Rat   789 HAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFL---------------- 837

  Fly   811 PGVNDKVEFGVQTDKAIRTKDRANNSLVRYQHQ---------------VDPPN---------ETI 851
                 :|...|.|...|:.   .....::|||:               :||.|         |.:
  Rat   838 -----RVGKLVDTSMDIQA---IQLPALQYQHERRASDWALDSNLCGVMDPTNGIGALIEEEEVL 894

  Fly   852 --LNTKTPINPIEIWRPIDREKGSCMAQWQAMFIKKKNYTASRALIFILILIIPLFYYIIVLGTA 914
              |||...::..:.|               |||:||..|:.....:....:::|:....:.|   
  Rat   895 VKLNTGLALHCQQFW---------------AMFLKKAAYSWREWRMVAAQILVPVTCLTLAL--- 941

  Fly   915 ASEKCAHRTDKQPVLPLSLDYYS--YDDMIILLEVDKQLYKSEGEAYVQLVKEPATVESVDSIFS 977
                            |:::|.|  :||..:.|.:::.     |...|.. ..|.|......:..
  Rat   942 ----------------LAINYTSEIFDDPPLKLSLNEY-----GTTVVPF-SVPGTSRLGQQLSE 984

  Fly   978 HL---LKA----PPIIRRDIK-----RKYVCGASFN-------------NASTITAWFNSDAFEH 1017
            ||   |:|    |..:..|::     |..|.|..||             ..:.:||.||:.|: |
  Rat   985 HLRDMLQAERQEPREVLGDLEEFLVFRASVEGGGFNERCLVATSFKDSGERTVVTALFNNQAY-H 1048

  Fly  1018 SAPIALNLVYNALGKAVFEDQDFSILVNRGDLHDFIWLNNASSMRRRYKRQNDPDYTDYSDYEIQ 1082
            |...||.:|.|.|         |.:|..                             ..:..||.
  Rat  1049 SPATALAIVDNLL---------FKLLCG-----------------------------PRASIEIS 1075

  Fly  1083 EYDVVVKPNSSSTSGQHNKSNPGDDNIITVQMSIIEAASTLYNEKGKRKQLFGTLIIITAYIALC 1147
            .|     |...||                     ::.|...:||..|...:...|:|..|::|  
  Rat  1076 NY-----PQPRST---------------------LQVAKDQFNEGRKGFDIALNLLIAMAFLA-- 1112

  Fly  1148 LSIFSIFVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAIYMGALTIAIYHFTI------- 1205
             |.|||....||....|..|.:.||.:..||.:..:.|.:.:.:....|.:....|.:       
  Rat  1113 -STFSILAVSERAVQAKHVQFVSGVHVATFWLSALLWDLISFLVPSLLLLVVFRAFDVHAFTRDG 1176

  Fly  1206 -WYQVVVMLLLIGFACLPFVYLCSLLFSLPNIAFAGIFAILVMTGGMLFSFMYMLTL----ITDV 1265
             ...::::|:|.|:|.:|.:||.|..||..:.|:..:....:::|...|..:.::.:    :.::
  Rat  1177 HMADLLLLLMLYGWAIIPLMYLLSFFFSAASTAYTRLTIFNILSGIATFIVVTIMRIPAVKLEEL 1241

  Fly  1266 NFTT--VFAILP-----MYVGTFGLFKCLAWREYC-NREVLPPIEELDCKFGNC----NVFCACK 1318
            :.|.  ||.:||     |.|..|  ::....|.|| :.||....    ||..|.    |.:....
  Rat  1242 SRTLDHVFLVLPNHCLGMAVSNF--YENYETRRYCTSSEVATHY----CKKYNIQYQENFYAWST 1300

  Fly  1319 P------------ERTWMEVWLLMVHCLVWFIFLWFSNFGYEIGYRFKPKLSNRIWHNNEKHIR- 1370
            |            ...::.:..|:...|:|.:..:...|             .|.|...|...| 
  Rat  1301 PGIGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFVCAF-------------RRRWTLAELQNRT 1352

  Fly  1371 --------VLDEERRVGLIPKYEHE-DYPIIVDQVTKNYCRAKN--AVQLVSFAIRPGDTFGLLG 1424
                    |.||..|| |:|..:.. |.|:|:::::|.|.:...  ||..:|.|::.|:.|||||
  Rat  1353 SVLPEDQDVADERSRV-LVPSLDSMLDTPLIINELSKVYDQRAPLLAVDRISLAVQKGECFGLLG 1416

  Fly  1425 AQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGDNAPKYLTGRQLLRIHC 1489
            ..|||||:.|:|:.||.:::.|:.:|.|:|:.......:..:|:|||.|....::|||::|.::.
  Rat  1417 FNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYA 1481

  Fly  1490 LLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLNIALA-IDSGSVLCLDDTNGSVD 1553
            .|.|:|:..|.|..|........:...::.:.|||||.||||:..:| |...:|:.||:.:..:|
  Rat  1482 RLRGIPERLIDACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMD 1546

  Fly  1554 HATQRFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFIGSLQQVRSEVSNTIVI 1618
            ...:|.:|..:...:.||:.:::|:.||||..|:|:|:|.:|.|:...:||.|.::|:..:...:
  Rat  1547 PVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSL 1611

  Fly  1619 RLRVNPSDGKLKRRFQQLIADMAEL----FPLATLHEALETCLIYHININVTTLANLFYQMEKIR 1679
            :.:|. |:||     |:::.:....    ||.:.|.:..:..:.||:.....:.|.:|..:||.:
  Rat  1612 QAKVR-SEGK-----QEVLEEFKAFVDLTFPGSVLEDEHQDMVHYHLPGCDLSWAKVFGILEKAK 1670

  Fly  1680 NEGLLEDYSITQVSLDEIYRILNDEEDPNLVD 1711
            .:..::|||::|:||::::......:.|...|
  Rat  1671 EKYGVDDYSVSQISLEQVFLSFAHLQPPTTED 1702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 445/1774 (25%)
Abca3NP_001382963.1 rim_protein <206..1699 CDD:130324 426/1681 (25%)

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