DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and Abca8b

DIOPT Version :10

Sequence 1:NP_732473.2 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:NP_038879.2 Gene:Abca8b / 27404 MGIID:1351668 Length:1620 Species:Mus musculus


Alignment Length:1858 Identity:423/1858 - (22%)
Similarity:773/1858 - (41%) Gaps:416/1858 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QKYRLLLWKDIKLQLTNWV-ELVMIIFLSALMPIFFSIGTKVAKSIFPPDIEMEKSPGPKSVNTS 72
            ||..|..|:..:..|..|| .|::::||     .::..|.........|..::.:   ..|...|
Mouse    17 QKNLLKKWRLKRESLMEWVSSLLLLLFL-----YWYPHGHGATDLSSVPTKDLGR---VDSFRQS 73

  Fly    73 LFVDLYFTPNNGILEQLITQLANISEFKSVEVFDTNSELYLQLMINRNA--IGIAFPSEW-YDIK 134
            .|: :.:||...:.:|::.::|........:|.....|..::.:...:|  |.:.|...: |.:|
Mouse    74 GFM-IGYTPVTSMTQQIMEKVAATPFMADKKVLGLLDEENIKELTESHAEIIRVIFSDTFSYHLK 137

  Fly   135 SCPEVLNLTIFMPLSIKRKDFK----------------YFESGFLLLQERISKIFIFFKNAGNGK 183
                 ......:|.|.:.:|..                :::.||:.||..|           |..
Mouse   138 -----FQFDQRIPTSRELRDHNAHCDGLYEDVNCLIAIFWKEGFVALQAAI-----------NAA 186

  Fly   184 IPRVLMNHFPYPSYVPNHYAESAKAMTYMTLIS--------FFLPCI----TIAKYV---VAEKE 233
            |.....||    |.:....:.|.|.|.....:.        |...||    .|..||   ||.:.
Mouse   187 IIETTTNH----SVMEELLSVSGKFMKIHPFVRQEGILTDFFIFTCIISFSPITYYVSINVARER 247

  Fly   234 RHQKAVLTAMGFSNSIHWLAW---YTKSMLLLLLCLLIMISIFSIGLIYEFSSLVCLMTIFLVYI 295
            :..|.::..||..:...||:|   |...:.::.|.|.::|......::   :|.:.:.::||:|.
Mouse   248 KRMKGLMMMMGLRDPAFWLSWGLLYAGFVFIMALSLALVIKSVQFFIL---TSFMVVFSLFLLYG 309

  Fly   296 HSLVLFAFFISSFFSRS----LSAVVATIL---MYFSTALPFLIVGAENSSVAAQTAASIGLNSA 353
            .|::..||.:|:...:|    ||..:.||.   :.|::...:|         .|....::.|.|.
Mouse   310 LSMITLAFLMSALVRKSVLTGLSVFLLTIFWGSLGFTSLYRYL---------PAPVEWTLSLFSP 365

  Fly   354 LFYILDSVAVMEMQSVGAQWYTIDNTA----SSGYKLSI-VGYMLIMISISWIELLICLYIEAVR 413
            ..:.|....::.:.      |.:::.|    :||..|.| ..:||:..:..::.|:  :|.|.|.
Mouse   366 FAFTLGMAQLLRVD------YDLNSNAPPDPASGSNLIIATNFMLVFDAFLYLALM--MYFEKVL 422

  Fly   414 TGEFEVPQPWSYPFQRRYWCPLRYGSSVFHQGAL--LPLAGKNSEGNLPAAHPTRQPIIYLDDRT 476
            ..|:.......:..:..:|...|..:.|..:..:  :|.:|.:.|...|..|             
Mouse   423 PNEYGHQHSPLFFLKSSFWLQTRKPAHVILEDGIDPVPSSGDSFEPVSPEFH------------- 474

  Fly   477 QENFQRVNISKKIGIEVRSLSKTF-GFRN---VVKDLFFNVYENEITALVGHKGSGKTTIIMMLC 537
                      .|..|.:|::||.: |..|   .:|||..::||.:|||::||.|:||:|::.:|.
Mouse   475 ----------GKESIRIRNISKEYKGKPNKIEALKDLTLDIYEGQITAVLGHSGAGKSTLLNILS 529

  Fly   538 GILQPTTGTVLI--NGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMM 600
            |:..||.|:|.|  |....:.:.:......|:|||.:|.|..::.|:::..|::::|....:...
Mouse   530 GLSVPTKGSVTIYNNNLSEMADLENILRIAGVCPQANVQFDFLTVRENLRLFAKIRGIPPQDVEK 594

  Fly   601 ESNIYISKLGLVDSQKWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQ 665
            |....:.:|.:.:.|...|..||.|.:|:|:...|:...|::.|.|||::||||..||.:...|:
Mouse   595 EVQRVLLELEMKNIQNILAQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLDPFSRHRVWNLLK 659

  Fly   666 KEKHGRTILMTTQQLEEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTLSCQMAPNSKADNL 730
            :.:..|.:|.:||.::|.:|||||...:::|::.|.|:..:||:.....|.||.|:......:|:
Mouse   660 ERRADRVVLFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGVGYHLSLQLKEVCVPENI 724

  Fly   731 TDLVRLYMTTTTSPVFHGVDVSYKLPRSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLS 795
            |.||:.::............:.|.||.....||||..|.| ::...|.:.::|||.:||:.::|.
Mouse   725 TSLVKQHIPAAKLSAEGEGKLLYTLPLETTYRFPELCQSL-DSCPGLGIENYGVSMTTLNEVFLK 788

  Fly   796 LDYGQGSSRLRGGADPGVNDKVEFGVQTDKAIRTKDRANNSLVRYQHQVDPPNETILNTKTPINP 860
            |: |:.|.     .:|.| |.|..| ||:::..|:     .|:..:..:....||   .||  :.
Mouse   789 LE-GKASI-----DEPEV-DIVGEG-QTERSGDTE-----RLMEMEQTLSSLRET---EKT--DG 835

  Fly   861 IEIWRPIDREKGSCMAQWQAMFIKKKNYTASRALIFILILIIPLFYYIIVLGTAAS----EKCAH 921
            :.:|    |::...:|:.:.:.:|.:..|....|:.:::.|.|..:..|......|    |...|
Mouse   836 MALW----RQQTCAIAKVRLLKLKHERKTLLSVLLILVVGICPFLFENISTKIRQSSYTWELSPH 896

  Fly   922 ----RTDKQP------VLPLSLDYYSYDDMI-------ILLEVDKQLYKSEGEAYVQLVKEPATV 969
                ...:||      :|.::....|.||.|       |.||||..                .|.
Mouse   897 DYFLAPGQQPQGMLTQLLIINKTEASIDDFIHSVERQNIALEVDAS----------------GTR 945

  Fly   970 ESVDSIFSHLLKAPPIIRRDIKRKYVCGASFNNASTITAWFNSDAFEHSA--------PIALNLV 1026
            :..|.                       .|:|.|..::....:.:|..:.        |:.::::
Mouse   946 DGTDD-----------------------PSYNGALIVSGNEKNHSFSFACNTKRLNCFPVLMDIL 987

  Fly  1027 YNALGKAVFEDQDFSILVNRGDLHDFIWLNNASSMRRRYKRQNDPDYTDYSDYEIQEYDVVVKPN 1091
            .|.|...|                       ..|.|.:         ||.|.|.:.|        
Mouse   988 SNGLLGMV-----------------------KPSARIQ---------TDRSTYLMDE-------- 1012

  Fly  1092 SSSTSGQHNKSNPGDDNIITVQMSIIEAASTLYNEKGKRKQLFGTLIIITA---YIALCLSIFSI 1153
                                          |::..:...|..| .||:.:|   |||:.    |:
Mouse  1013 ------------------------------TIHPLEDLWKTAF-WLILTSACPPYIAMS----SV 1042

  Fly  1154 FVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAIYMGALTIAIY-------HFTIWYQVVV 1211
            ...|.|.   ..|..:.|:....:|....:.|..:|......:::..|       .|:|...|:.
Mouse  1043 TDYKNRA---WFQLRVSGLFPSAYWVGQAMVDIPLYCFVFLFMSLMDYLFRFPDTMFSIISHVIQ 1104

  Fly  1212 MLLLIGFACLPFVYLCSLLFSLPNIAF--------AGIFAI--LVMTGGMLFSFMYMLTLITDVN 1266
            :...:|:|       .||:|....|:|        :||:::  .::|   :||...:| |..||:
Mouse  1105 IPCSVGYA-------ISLIFLTYVISFISRKGKKNSGIWSLSFYIIT---VFSVAVIL-LAFDVD 1158

  Fly  1267 FTTVFAILPMYVGTFGLFKCLAWREYCNREVLPPIEELDCKFGNCNVFC--------ACKPERTW 1323
            .|..:.|.                      ::||...:.|...:.::|.        ..:|...:
Mouse  1159 GTQYYIIF----------------------LIPPSTLVGCLILSLHLFIGQIFEEGQVIEPFLVF 1201

  Fly  1324 M------EVWLLMVHCLVWFIFLWFSNFGYEIG-----YRFKPKLSNRIWHNNEKHIRVLDEE-- 1375
            :      .:::..:.||.|       .||.:..     :|..|: :|.::.|.|:   ..||:  
Mouse  1202 LIPFLHVFIFIFTLRCLEW-------KFGKKTMRKDPIFRISPR-NNDVYQNPEE---PEDEDED 1255

  Fly  1376 ------RRVGLIPKYEHEDYPIIVDQ-VTKNYC----------RAKNAVQLVSFAIRPGDTFGLL 1423
                  |....:.....::.|:|:.. :.|.|.          :||.|.:.|||.:|.|:..|||
Mouse  1256 VQMERMRTANALVSTSFDEKPVIIASCLRKEYAGKQKHCLSKKKAKIATRNVSFCVRKGEILGLL 1320

  Fly  1424 GAQGAGKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGDNAPKYLTGRQLLRIH 1488
            |..||||::..:||:|:|.::.|.:.::|.  ||......:  |:|||.:.....||.::.|.|.
Mouse  1321 GHNGAGKSTSLKMISGDTKVTAGQVLLKGS--REGDTPGFL--GYCPQENALWPNLTVKEHLEIF 1381

  Fly  1489 CLLHGVPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLNIALAI-DSGSVLCLDDTNGSV 1552
            ..:.|:.|.|......::|.....:|||..|:.|.|.|.||||...|:| .:.|:|.||:.:..:
Mouse  1382 AAVRGLRKSHAAVAITRLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSILLLDEPSTGL 1446

  Fly  1553 DHATQRFIWRKLEA-VKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFIGSLQQVRSEVSNTI 1616
            |...|:.||:.:.| :|.:.|..||||..|.||.|:|.|||.||:|.:..|||:|.::|:.....
Mouse  1447 DPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDY 1511

  Fly  1617 VIRLRVNPSDGKLKRRFQQLIADMAELFPLATLHEALETCLIYHININ-VTTLANLFYQMEKIRN 1680
            ::.::|     |...:.:.|..::..|||.|:..|...:.:.|.:.:. |..|:..|:::||::.
Mouse  1512 LLEMKV-----KTLEQVEPLNTEILRLFPQASRQERYSSLMAYKLPVEAVQPLSQAFFKLEKVKQ 1571

  Fly  1681 EGLLEDYSITQVSLDEIYRILNDEEDPN---LVDLDST 1715
            ...||:||::|.:|::::..|:.|::.:   |.:|||:
Mouse  1572 TFDLEEYSLSQSTLEQVFLELSKEQELDGLELEELDSS 1609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_732473.2 rim_protein <118..1698 CDD:130324 396/1726 (23%)
Abca8bNP_038879.2 rim_protein <265..1596 CDD:130324 365/1566 (23%)

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