DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31213 and abca1b

DIOPT Version :9

Sequence 1:NP_001262752.1 Gene:CG31213 / 42382 FlyBaseID:FBgn0051213 Length:1809 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:1970 Identity:484/1970 - (24%)
Similarity:826/1970 - (41%) Gaps:420/1970 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LWKDIKLQLTNWVE------LVMIIFLSALMPIFFS---IGTKVAK----SIFPPDIEMEKSPGP 66
            :|::.:.::.|::|      |:..:.|:.|...|||   .||:.:.    |......|..:..| 
Zfish   419 MWEEARPKVWNFMENSNEMDLMRTLLLNNLTANFFSAQLAGTQWSVEDVISFLSKHSEDTRPQG- 482

  Fly    67 KSVNTSLFVDLYFTPNNGILEQLITQLANISEFKSVEVFDTNSELY---LQLMINRNA-IGIAFP 127
               ....:.|::...:..|:.  |::.........:|...|..:|.   :.|:.||.. .||.| 
Zfish   483 ---TAFTWRDVFNETDQAIMS--ISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIVF- 541

  Fly   128 SEWYDIKS----CPEVLNLTIFMPL-SIKR------------------KDFKYFESGFLLLQERI 169
               .||.|    .|..:|..|.|.: :::|                  :|.:|...||..||:.:
Zfish   542 ---LDIPSNSSELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYLQDVV 603

  Fly   170 SKIFIFFKNAGNGKIPR--VLMNHFPYPSYVPNHYAE--SAKAMTYMTLISFFLPCITIAKYVVA 230
            ....|   .|..|...:  |.:...|||.||.:.:..  |.....:|||...:...| |.|.||.
Zfish   604 EHSII---RAVTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAI-IIKGVVY 664

  Fly   231 EKERHQKAVLTAMGFSNSIHWLAWYTKSMLLLLLCLLIMISIFSIGLIYEFSSLVCLMTIFLVYI 295
            |||...|..:..||..|.|.|.:|:..|::.||:...:::.:..:|.:..:|....:......:.
Zfish   665 EKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGVVFLFLGSFA 729

  Fly   296 HSLVLFAFFISSFFSRSLSAVVATILMYFSTALPFLIVGAENSSV--AAQTAASIGLNSALFYIL 358
            ...::..|.||:.|:|:..|.....::||:..||:::..|....|  ||:..||:....|..:..
Zfish   730 VVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFAAKVIASLLSPVAFGFGC 794

  Fly   359 DSVAVMEMQSVGAQWYTIDNTASSGYKLSIVGYMLIMISISWIELLICLYIEAVRTGEFEVPQPW 423
            :..|:.|.|.||.||..:.::.......::...:::|...:::..::..|||.|..|::.:|:||
Zfish   795 EYFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTWYIETVFPGQYGIPRPW 859

  Fly   424 SYPFQRRYWCPLRYGSSVFHQGALLPLAGKNSEGNLPAAHPTRQPIIYLDDRTQENFQRVNISK- 487
            .:||.:.||                  .|:||..| .|.|..:           .|...|.|.: 
Zfish   860 YFPFTKSYW------------------FGENSTNN-TAIHGKK-----------SNAGAVCIEEE 894

  Fly   488 ----KIGIEVRSLSKTF--GFRNVVKDLFFNVYENEITALVGHKGSGKTTIIMMLCGILQPTTGT 546
                |:|:.:.:|.|.:  |.:..|..|....:|.:||:.:||.|:||||.:.:|.|:..||:||
Zfish   895 PTHLKLGVYIENLVKVYRHGKKLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT 959

  Fly   547 VLINGYDIVTEAKVAKSSLGICPQHSVIFKGMSARDHIYFFSRVKGYNKTEAMMESNIYISKLGL 611
            ..|.|.||.:|....:.|||:||||:|:|..::..:||:|::|:||.::.|...|....:|..||
Zfish   960 AYIMGKDIRSELSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILSDTGL 1024

  Fly   612 VDSQKWDAMRLSPGNQRRLSLACALCAGSKVILCDEPSSGLDPIGRHELMRFLQKEKHGRTILMT 676
            ...:|....:||.|.||:||:|.|...||||::.|||::|:||..|..:...|.|.:.|||||::
Zfish  1025 PHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRAGRTILLS 1089

  Fly   677 TQQLEEGEILADRIAIMNDGQILCYGTLGYLKQLPFTSYTL------------SCQMAPNS---- 725
            |..::|.:||.|||||::.|::.|.|:..:||....|.|.|            ||:.:.::    
Zfish  1090 THHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNTEPSLSSCRNSSSTVSFV 1154

  Fly   726 -KADNLTD---------------LVRLYMTTTTSPVF-----------------------HGVDV 751
             |.||.::               ...:..:...|||.                       .|.::
Zfish  1155 KKDDNASESSSDAGLGSDQESEAATAIGTSWPESPVVPVDVTIISRLILKHVPAARMVEDQGHEI 1219

  Fly   752 SYKLP--RSQIDRFPEFFQQLEENKKSLNVVSFGVSDSTLDGIYLSL--DYGQGSSRLRGGADPG 812
            :|.||  .::...|.|.|..|::....|.:.|:||||:||:.|:|.:  |.|..:..|..|..|.
Zfish  1220 TYVLPYESAKNGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSGVDTEMLSDGTLPV 1284

  Fly   813 VNDKVE-FGVQTDKAIR--TKDRANNSLVRYQHQVDPPN-ET-ILNTKTPINPIEI--WRPIDRE 870
            ...:.. ||......::  |:|   :|....:.:.||.: || .|:........::  | .:.|:
Zfish  1285 RRQRRHAFGADHQSCLKPLTED---DSFDCNESEGDPESKETDYLSGSDGKGSYQVKGW-SLKRQ 1345

  Fly   871 KGSCMAQWQAMFI---KKKNYTASRAL--IFILI-----LIIPLFYYIIVLGTAASEKCAHRTDK 925
            :...:. |:.:..   .:|.:.|...|  :|:.|     ||:|.|                  .|
Zfish  1346 QFVALL-WKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF------------------GK 1391

  Fly   926 QPVLPLSLDYYSYDDMIILLEVDKQLYKSEGEAYVQLVKEP------------------------ 966
            .|  .|:|:.:.|::..:....|.....|..:....|..:|                        
Zfish  1392 YP--SLALNPWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGTRCMKGESIPDAPCTMGDEEW 1454

  Fly   967 ATVESVDSIFSHLLK---------------------------------APPIIR----------- 987
            :|.|..:||...|..                                 .||.|:           
Zfish  1455 STPEVPESIIEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGAGGLPPPQIKISETETLQNLT 1519

  Fly   988 -RDIK----RKY--VCGASFNNASTITAWFN-----------------------SDAFEHSAPIA 1022
             |:|.    :.|  :.|.|..|    ..|.|                       .||......|.
Zfish  1520 GRNISDYLVKTYAQIIGKSLKN----KIWVNEFRYGGFSLGARSTQVLPPAEEIDDAISRVREIF 1580

  Fly  1023 LNLVYNALGKAVFEDQD-----FSILVNRGDLHD--FIWLNN---------ASSMRRRYKRQNDP 1071
                  .|||......|     .|..:|..|..:  .||.||         .:.|.....|.|.|
Zfish  1581 ------QLGKDSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGWHSIGAFLNVMNNGILRANLP 1639

  Fly  1072 DYTDYSDYEIQEYDVVVKPNSSSTSGQHNKSNPGDDNIITVQMSIIEAASTLYNEKGKRKQLFGT 1136
            ...|.|::.|..|:..:                   |:...|:|.:...:|..:           
Zfish  1640 PGKDPSEFGITAYNHPL-------------------NLTKEQLSQVALMTTSVD----------- 1674

  Fly  1137 LIIITAYIALCLSI----FSIFVTKERVEHFKMQQEIYGVTLFYFWSTHFVGDFLIYAIYMGALT 1197
             ::::..:...:|.    |.:|:.:|||...|..|.|.||..:.:|..:|:.|...|.:   ..|
Zfish  1675 -VLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVV---PAT 1735

  Fly  1198 IAIYHFTIWYQ-----------VVVMLLLIGFACLPFVYLCSLLFSLPNIAFAGIFAILVMTG-- 1249
            :.|..|..:.|           :.::|||.|::..|.:|..|.||.:|:.|:..:.::.::.|  
Zfish  1736 LVILIFVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN 1800

  Fly  1250 GMLFSFM------YMLTLITDVNFTTVFAILPMYVGTFGLFKCLAWREYCNREVLPPIEELDCKF 1308
            |.:.:|:      :.:..|.|: ...|..|.|.:....||...:.     |:.:...:|    :|
Zfish  1801 GSISTFVMELFGNHEIGGINDI-LKNVLLIFPHFCLGRGLIDMVK-----NQAMADALE----RF 1855

  Fly  1309 GNCNVFCACKPERTWMEVWLLMVHCLVWFIFLWFSNFGYEIGYR--FKPK-LSNRIWHNNEKHIR 1370
            |........:.:.....::.:.|..:|:||....      |.||  |:|| |..::....|:...
Zfish  1856 GENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVL------IQYRFFFEPKSLCPKLSPIGEEDED 1914

  Fly  1371 VLDEERRV------GLIPKYEHEDYPIIVDQVTKNYCR-AKNAVQLVSFAIRPGDTFGLLGAQGA 1428
            |..|.:|:      |.|         :.:.|:||.|.| .|.||..:...|.||:.|||||..||
Zfish  1915 VARERQRIMSGAGQGDI---------LELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGA 1970

  Fly  1429 GKTSIFQMIAGETSMSHGNIYVRGHSLREHRNAAKMEVGFCPQGDNAPKYLTGRQLLRIHCLLHG 1493
            ||||.|:|:.|::.::.|..::.|.|:....:.....:|:|||.|.....||||:.|..:.:|.|
Zfish  1971 GKTSTFKMLTGDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRG 2035

  Fly  1494 VPKDHIKAVSEQMAIEFNFKDQLDRPIHTYSGGKKRKLNIALA-IDSGSVLCLDDTNGSVDHATQ 1557
            ||::.:.||:|....:......:|:...:||||..|||:.|:: |.:..|:.||:....:|...:
Zfish  2036 VPENEVCAVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR 2100

  Fly  1558 RFIWRKLEAVKRSGRPVLLTTQSMEEANAVCSRVAFLVAGEMMFIGSLQQVRSEVSNTIVIRLRV 1622
            |.:|..:.:|.:.||.|:||:.||||..|:|:|:|.:|.|....:||:|.:::...:...|.|||
Zfish  2101 RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRV 2165

  Fly  1623 NPSDGKLKRRFQQLIADMAELFPLATLHEALETCLIYHININVTTLANLFYQMEKIRNEGLLEDY 1687
            ...|..|    |.::..:....|.:||.|.....|.|.:..::|:||::|..:.|.:....:|||
Zfish  2166 AGPDPDL----QPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKEFLRIEDY 2226

  Fly  1688 SITQVSLDEIY-RILNDEED 1706
            |::|.:||::: ....|:.|
Zfish  2227 SVSQTTLDQVFVNFAKDQSD 2246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31213NP_001262752.1 ABC2_membrane_3 32..>295 CDD:289468 69/300 (23%)
ABC_subfamily_A 491..708 CDD:213230 86/218 (39%)
drrA 498..796 CDD:130256 116/356 (33%)
ABC2_membrane_3 <1132..1285 CDD:289468 40/175 (23%)
CcmA 1391..1672 CDD:224054 96/282 (34%)
ABC_subfamily_A 1391..1609 CDD:213230 80/219 (37%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 482/1964 (25%)
ABC_subfamily_A 902..1121 CDD:213230 86/218 (39%)
ABC_subfamily_A 1932..2152 CDD:213230 80/219 (37%)
DUF4162 2146..2238 CDD:290451 28/95 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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