DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP92B and si:ch211-247j9.1

DIOPT Version :9

Sequence 1:NP_001287417.1 Gene:RhoGAP92B / 42371 FlyBaseID:FBgn0038747 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_005161458.1 Gene:si:ch211-247j9.1 / 570019 ZFINID:ZDB-GENE-091204-212 Length:647 Species:Danio rerio


Alignment Length:620 Identity:140/620 - (22%)
Similarity:220/620 - (35%) Gaps:191/620 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 RDYVLNQRNYH---------ERALQHVNASL---------ARIQDTIQGTEKSRFGTSLKEHLTS 259
            ||.:::..:|.         |..|:.:|..:         .|:::|:  ..:.|:|    :|:. 
Zfish    21 RDVLVSPGSYFFLSNSCGQGEEWLKSLNKGIWIPFTGVFGQRLEETV--LYERRYG----DHMA- 78

  Fly   260 TNREISYIVELCCCCLLEHGLEEEGLLRVGCASTKLRRMKHALEAQHVKTPLPLDYQDPHVIGSI 324
                 ..:||.|...:.|.||.|.||.|....:|.::.::.|.:|.  :.|......|.|.:.|:
Zfish    79 -----PLVVEQCVDFIRERGLTEVGLFRQPGQATLVKELQEAFDAG--EKPSFDSSTDVHTVASL 136

  Fly   325 LKLYLRELPEPLLTYNLYKDFIRIAERHSEAERK--TEIKAILTKLPKENYANLRYLTRFLSIVQ 387
            ||||||||||||:.::.|::|:...:|......|  .|::::|.:||..|:..|:|:.:||:.||
Zfish   137 LKLYLRELPEPLVPFSRYEEFLVCGKRIPSDREKGLQELRSLLYELPVANFNLLKYICQFLNDVQ 201

  Fly   388 QRSALNKMSSQNLAIVMSPNMLWPRIDKSSNAPADYIGQVNSSSAANIIVELLISQWDYFFIGE- 451
            ..|.:||||.||||.|..||:|.|:.:.    |...||   .::....::..||.:....|..| 
Zfish   202 SYSNVNKMSIQNLATVFGPNILRPKAED----PESIIG---GAAVVQHLMSELIREHGLLFSREN 259

  Fly   452 -------VEFYLTLQKQKLFVEGKSKSNSSNENLDRNDSEVMESPRYGTLRRQKANAPS----PP 505
                   ::....:|:....||...:..|       :..|.:.:..|.||..|....|.    ||
Zfish   260 CNLPETSLQAVHDIQRHSDLVEWVHEPPS-------HPREPLINKDYTTLPDQTVACPRKHSLPP 317

  Fly   506 TTNGNGIIMTTSQTSHRPHAKELFPQQTPEKQEKPAKPP-----LPNLPQFQSPAASQPTQTQLE 565
            ||...|........:...|..|     |..:.::...|.     ..|..|..|...|..|:..|.
Zfish   318 TTERTGSFQKPCDKTLLHHLSE-----TERQLQEDCSPTSSTLICDNQSQHNSAQESLHTRHVLS 377

  Fly   566 PLPPPPVTPAKPVPMTRTQFFGLDNLPSPTADRKSTDSIGSFKLKPDVPQKPLLPKRPTVLGVGV 630
            |..|||..                          ||.:                    .||..||
Zfish   378 PSTPPPAC--------------------------STVN--------------------NVLEAGV 396

  Fly   631 PKADGKSDDEGGTTPTQATIDNGNGSVRFKTEHFLDKLRQENGETNGTREVSSTT--------KE 687
            ...            .|:...:|....|:..|..|       ||:.|:.|...:|        .|
Zfish   397 EMC------------VQSRSWSGMEDARWGPERLL-------GESGGSSEAQDSTLSVYDNIVTE 442

  Fly   688 NNHNHD----PPATAADQNQQ-----------------QAQPQVTTP--------------ISPN 717
            ..:..|    ..|:|.|.|..                 .|.|...:|              :.||
Zfish   443 VQYTEDRDAKGTASATDSNSSWSSCEIVPLDGGSGSGGAASPCHASPGQFPSFRMDSGEEDLRPN 507

  Fly   718 SFQTPKRPT------------VP-APPPPTNWKSS 739
            |..:...||            :| ||..|..:.:|
Zfish   508 SLASSSAPTDAPLSTGSSEVFLPNAPQEPLGFPAS 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP92BNP_001287417.1 BAR 27..257 CDD:299863 10/61 (16%)
RhoGAP_nadrin 245..452 CDD:239851 68/216 (31%)
si:ch211-247j9.1XP_005161458.1 RhoGAP 57..255 CDD:295372 68/218 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4270
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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