DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP92B and arhgap17

DIOPT Version :9

Sequence 1:NP_001287417.1 Gene:RhoGAP92B / 42371 FlyBaseID:FBgn0038747 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002932512.1 Gene:arhgap17 / 549590 XenbaseID:XB-GENE-981776 Length:856 Species:Xenopus tropicalis


Alignment Length:886 Identity:235/886 - (26%)
Similarity:377/886 - (42%) Gaps:239/886 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKRQFAKIKIAA-ENLSRSSKSDSKDSELEAIERQVDRYRDTIEKIVRK-LPALSGGGGSGSGSS 63
            ||:||.::|:.| :.:.|:.|::....:|..|||::|..|.......:| |..|.|..|:     
 Frog     1 MKKQFNRMKVLANQTVGRAEKTEVLSDDLLQIERRLDTVRLICHNAHKKLLGCLQGQPGT----- 60

  Fly    64 EEQDKRTKKNSHYKIAQALDESAKELPKDMPLQKVLANCGELEKTMAECIIESELETEAKVVRRL 128
             |.:||.||.|...::|::.|....|..|..|.|.|.:|.:.|:.:|..:...|:..|..::..|
 Frog    61 -EAEKRYKKLSLMGVSQSMVEGCSLLGDDTLLAKTLYSCSDAEQQLAMELSMHEIAIEKDIMEPL 124

  Fly   129 KNILDKEIQEISTLKRNVSRTLQEYTSLK----RSHEAAIRLEEPAAKVNHIKSQQEECELKLEK 189
            ..:.:.||..|...::.:::.:.::.|.:    ::.::....:....|::.:|...:|...|:|:
 Frog   125 NQLAEVEIPNIQKQRKQLTKLVLDWDSARARFNQAQKSGANFQMQPGKMDSLKEDMDEAMNKVEQ 189

  Fly   190 ERDAWAAQMLELIAKEDEIVSCIRDYVLNQRNYHERALQHVNASLARIQ-DTIQGTEKSRFGTSL 253
            .||...|.|...::||.|........:..|..||.:||..:..:|..|| ...:.|||..|||.|
 Frog   190 CRDQLVADMYNFVSKEGEYGKYFVTLLETQAEYHRKALAALEKALPEIQAQQDKWTEKPAFGTPL 254

  Fly   254 KEHLTSTNREISYIVELCCCCLLEHGLEEEGLLRVGCASTKLRRMKHALEAQHVKTPLPLDYQDP 318
            :|||..:.|||:..:|.|...|||.|::||||.|:...::||:::|.||:..  .:.|...|.||
 Frog   255 EEHLKRSGREIALPIEACVMMLLETGMKEEGLFRIAAGASKLKKLKAALDCS--TSQLEEFYSDP 317

  Fly   319 HVIGSILKLYLRELPEPLLTYNLYKDFIRIAERHSE--AERKTEIKA---ILTKLPKENYANLRY 378
            |.:...||.|||||||||:|:|||:::     .|:.  .::.|:::|   :..||||.|..|.||
 Frog   318 HAVAGALKSYLRELPEPLMTFNLYEEW-----NHAGNIPDQNTKLQALWVVCQKLPKPNLENFRY 377

  Fly   379 LTRFLSIVQQRSALNKMSSQNLAIVMSPNMLWPRIDKSSNAPADYIGQVNSSSAANI--IVELLI 441
            |.:||:.:...|.:|||:..|:|||:.||:||.|.:.:       :.::.::::.::  |:|.:|
 Frog   378 LVKFLAKLSHHSDINKMTPSNIAIVLGPNLLWARHEGT-------LAEIAAATSVHVMTIIEPII 435

  Fly   442 SQWDYFFIGEVEFYLT----------------------------LQKQKLF---VEGKSKSNSSN 475
            ...|:||..|::|.::                            |:|::.|   ::|:.|.:||.
 Frog   436 QHADWFFPDELDFNVSGAFVPVAPTTHSNNVPYTGNDMSYEFGPLEKKRPFSMVMDGELKRDSSG 500

  Fly   476 ENLDRNDSEVME----SPRYGTLRRQKANAPS-----PPTTNGNGI--------IMTTSQTSHRP 523
                   .:||:    :.|.|||.| |..||:     |||.:||..        :..|..||.:|
 Frog   501 -------LKVMDYYLNTRRGGTLNR-KHGAPTVQPPLPPTESGNQSDHSASSLDVGPTVATSVQP 557

  Fly   524 HA------------------KELFPQQTPEK--------------------------------QE 538
            .|                  |:|.|..||..                                .:
 Frog   558 TASADPVLTHSNDETSTFKTKDLTPATTPPSLRNGTHQPPGGGNAVVPAQGNANPSPISSRRGTK 622

  Fly   539 KPA----KPPLP--------------NLPQFQSPAASQPTQTQLEPLPPPPVTPAKPVPMTRTQF 585
            |||    ||.:|              |:|...||   :|:.|...|.||..:|.....|.|.|..
 Frog   623 KPAPAPPKPVVPHSGQLANSGSSISANVPPSISP---KPSNTAHNPSPPSSITSQGVAPATSTHS 684

  Fly   586 FGLDNLPSPTADRKSTDSIGSFKLKP--DVPQKPLLPKRPTVLGVGVPKADGKSDDEGGTTPTQA 648
            .|       |..|:.:.|      :|  ..|..|  |.:|                     |||:
 Frog   685 HG-------TLPRRHSGS------QPFIQAPSHP--PPQP---------------------PTQS 713

  Fly   649 ---TIDNGNGS-VRFKTEHFLDKLRQENGETNGTREVSSTTKENNHNHDP--------------- 694
               ::...|.. |.|.||                   |||.:.::..|.|               
 Frog   714 ATLSLSKANAQPVAFPTE-------------------SSTDQSSSPPHTPTPPDTPPLGVEHPGS 759

  Fly   695 -PATAADQNQQQAQPQVTTPISPNSFQTPK-RPTVPAPPPP 733
             ||.......|.:.||..|...|.....|: |||||.||.|
 Frog   760 QPAAPEATQTQPSPPQTGTLPRPRPVPKPRVRPTVPPPPQP 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP92BNP_001287417.1 BAR 27..257 CDD:299863 62/235 (26%)
RhoGAP_nadrin 245..452 CDD:239851 81/213 (38%)
arhgap17XP_002932512.1 BAR 13..257 CDD:386243 63/249 (25%)
RhoGAP_nadrin 246..445 CDD:239851 81/212 (38%)
DUF5585 515..>849 CDD:375359 78/345 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 124 1.000 Domainoid score I5433
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9984
Inparanoid 1 1.050 252 1.000 Inparanoid score I3127
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000886
OrthoInspector 1 1.000 - - otm48131
Panther 1 1.100 - - LDO PTHR14130
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3388
SonicParanoid 1 1.000 - - X445
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.090

Return to query results.
Submit another query.