DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP92B and Fam13a

DIOPT Version :9

Sequence 1:NP_001287417.1 Gene:RhoGAP92B / 42371 FlyBaseID:FBgn0038747 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001094332.1 Gene:Fam13a / 362378 RGDID:1309807 Length:692 Species:Rattus norvegicus


Alignment Length:684 Identity:119/684 - (17%)
Similarity:226/684 - (33%) Gaps:259/684 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 EIQEIST----LKRNVSRTLQEY-----TSLKRSHEAAIRLEEPA-AKVNHIKSQQEECELKLEK 189
            ::..:||    |:|.:...::|:     :|..:|.|.:    ||. :..:...::|...:.|  |
  Rat    29 QVSSVSTTGELLERTIRSAVEEHLFDVNSSADQSSEDS----EPGPSSASSTPTRQRGHQFK--K 87

  Fly   190 ERDAWAAQMLELIAKED---EIVSCIRDYVLNQRNYHERALQHVNASLARIQDTIQGTEKSRFGT 251
            :.|.|..|..|||.||:   .:.|| .:.:||.:                        |..||..
  Rat    88 QDDVWYGQDKELINKENIPCGLSSC-DECILNSQ------------------------EAERFQD 127

  Fly   252 SLKEHL-----TSTNREISYIVELCCCCLLEHGLEEEGLLRVGCASTKLRRMKHALEAQHVKTPL 311
            .:.|::     ....:..|.:.|||                                        
  Rat   128 DICEYVGERSKAKRQKSSSRLAELC---------------------------------------- 152

  Fly   312 PLDYQDPHV-IGSILKLYLRELPEPLLTYNLYKDFIRIAERHSEAERKTEIKAILTKLPKENYAN 375
              :..|.|: ..|:..:..:|..||                  ||   .|:::..:|..:.::.:
  Rat   153 --ENHDGHLSTESLSSMQTQETAEP------------------EA---VELRSSESKEAERSWRD 194

  Fly   376 LRYLTRFLSIVQQRSALNKMSSQNLAIVMSPNMLWPRIDKSSNAPADYI---GQVNSSSAANIIV 437
            .::.......:|:..:::....|             |.....:....::   .|::.::..:...
  Rat   195 TQHCESPAMKIQEHPSISDTKQQ-------------RNQDDDDQQESFVPDLPQLDLTALCDKTW 246

  Fly   438 ELLISQWDYFFIGEVEFYLTLQKQKLFVEGKSKSNSSNENLDRNDSEVMESPR---YGTLRRQKA 499
            |..|..|....:...|..|:.|..:|.          ::.|| .||:.|.|||   ||..|:...
  Rat   247 EEPIPSWQQENVESDEARLSPQAGRLI----------HQLLD-EDSDPMLSPRFYAYGQSRQYLD 300

  Fly   500 NA---PSPPTTNGNGIIMTTSQTSHRPHAKELFPQQ-------------------------TPEK 536
            :.   ||||.::......::|..|:....::|.|.|                         .|..
  Rat   301 DTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPVQLTRRIQTLKKKIRKFEDRFEEERKYRPSH 365

  Fly   537 QEKPAKPPL----PNLPQFQSPAASQPTQTQLEPLPPPPVTPAKPVPMTRTQFFGLDNLPSPTAD 597
            .:|.|.|.:    .:|.:|:    .|..:|:|:      ::.....|.||.:   .:.||.    
  Rat   366 SDKAANPEVLKWTNDLAKFR----KQLKETKLK------ISEEDLTPRTRQR---SNTLPK---- 413

  Fly   598 RKSTDSIGSFKLKPDVPQKPLLPK--RPTVLGVGVPKADGKSDDEGGTTPTQATIDNGNGSVRFK 660
                 |.||...|.|..::.|:.|  ||:|                     :||:          
  Rat   414 -----SFGSQLEKEDEKKQELVDKAIRPSV---------------------EATL---------- 442

  Fly   661 TEHFLDKLRQENGETNGTREVSSTTKENNHN---------------HDPPATAADQNQQQAQPQV 710
             |..|.||:::..|::...::...||:...|               |..|.|..::       |:
  Rat   443 -EGILRKLQEKRMESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKTER-------QI 499

  Fly   711 TTPISPNSFQTPKR-----PTVPAPPPPTNWKSS 739
            ..|:. :.::..|:     .|||....|::.:.|
  Rat   500 MKPLY-DRYRLVKQILSRASTVPIIGSPSSKRRS 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP92BNP_001287417.1 BAR 27..257 CDD:299863 29/134 (22%)
RhoGAP_nadrin 245..452 CDD:239851 25/215 (12%)
Fam13aNP_001094332.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4270
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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