DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP92B and arhgap22

DIOPT Version :9

Sequence 1:NP_001287417.1 Gene:RhoGAP92B / 42371 FlyBaseID:FBgn0038747 Length:740 Species:Drosophila melanogaster
Sequence 2:XP_002940376.2 Gene:arhgap22 / 100127847 XenbaseID:XB-GENE-5807514 Length:544 Species:Xenopus tropicalis


Alignment Length:523 Identity:124/523 - (23%)
Similarity:208/523 - (39%) Gaps:120/523 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 IAKEDEIVSCIRDYVLNQRNYHERALQHVNASLARIQDTIQGTEK--------SRFGTSLKEHLT 258
            ::..|::......::|...::||            ::|.::...|        :.||..|::.::
 Frog    12 LSSGDKVTVNHETFLLMANSHHE------------MEDWVRAIHKVIWAPFGGAVFGQRLEDAVS 64

  Fly   259 STNREISYIVELCCCCLLEHGLEEEGLLRVGCASTKLRRMKHALEAQHVKTPLPLDYQ-DPHVIG 322
            ...|....:||.|...:.|:||:||||.|:...:|.::.::...::....|   .|.. |.|.:.
 Frog    65 LETRHAPLVVEQCVDFIRENGLQEEGLFRLPGQATLVKELQDTFDSGGKPT---FDKSTDVHTVA 126

  Fly   323 SILKLYLRELPEPLLTYNLYKDFIRIAERHS--EAERKTEIKAILTKLPKENYANLRYLTRFLSI 385
            |:|||||||||||::.::.|:||:|.|...|  :.|...|:..::..||..||..|:|:..||..
 Frog   127 SLLKLYLRELPEPVIPFSRYQDFLRCAHILSGDQGEGTQELSILIKSLPPVNYNLLKYICSFLDE 191

  Fly   386 VQQRSALNKMSSQNLAIVMSPNMLWPRIDKSSNAPADYIGQVNSSSAANIIVELLISQWDYFFIG 450
            ||..|..|||:.||||.|.:||:|.|:       ..|.:..:..:|....::.:||.:..:.|..
 Frog   192 VQSYSDTNKMNVQNLATVFAPNILRPK-------QQDPVALIEGASLIQHLLTILIHENHWIFQA 249

  Fly   451 EVEFYLTLQKQKLFVEGKSKSNSSNENLDRNDS-------EVMESPRYGTLRRQKANAPSPPTTN 508
                          |...|....|.:.:|...|       :.:|...:|  ..::..|.|....|
 Frog   250 --------------VSADSPVGVSVQQIDNTQSIQDVDTAKSLEPTLHG--NHEQTWAKSQIFAN 298

  Fly   509 GNGIIMTTSQTSHRPHAKELFPQQTPEKQEKPAKPPLPNLPQFQSPAAS--QPTQTQLEPLPPPP 571
            .....|.:|       :|.:||...|.           |||    |:.|  |...:.|.......
 Frog   299 WKASFMLSS-------SKPVFPSCDPS-----------NLP----PSVSWLQDGFSSLRSHKEKD 341

  Fly   572 VTPAKPVPMTRTQFFGLDNLPS--PTADRKSTDSIGSFKLKPDVPQKPLLPKRPTVLGVGVPKAD 634
            ...|:       :....||:||  |:....:..|..:..|...      |...|...|..|.:..
 Frog   342 SVKAQ-------RLSSYDNVPSCLPSLPSSNWSSFSNVSLNES------LCSCPACGGSQVSQGS 393

  Fly   635 ------GKSDDEGGTTPTQATID--------NGNGSVRFKTEHFLDKLRQENGET-NGTREVSST 684
                  ..|:.|.|..|..::|:        :||.          |.|..::||. |..:::.|.
 Frog   394 ESGWHLSLSESERGILPLPSSIERLELCVSSSGNS----------DTLTSDSGEVWNTYQKIVSE 448

  Fly   685 TKE 687
            .||
 Frog   449 LKE 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP92BNP_001287417.1 BAR 27..257 CDD:299863 9/62 (15%)
RhoGAP_nadrin 245..452 CDD:239851 69/217 (32%)
arhgap22XP_002940376.2 PH-like <16..52 CDD:388408 6/47 (13%)
RhoGAP 53..247 CDD:383032 67/203 (33%)
Myosin_tail_1 <446..>521 CDD:366712 3/6 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.