DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4538 and clpxb

DIOPT Version :9

Sequence 1:NP_001287413.1 Gene:CG4538 / 42369 FlyBaseID:FBgn0038745 Length:679 Species:Drosophila melanogaster
Sequence 2:XP_002667004.2 Gene:clpxb / 100332309 ZFINID:ZDB-GENE-130404-1 Length:618 Species:Danio rerio


Alignment Length:619 Identity:348/619 - (56%)
Similarity:425/619 - (68%) Gaps:76/619 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RFHLATRNCARNRLMRLEPAMAIPAY---IDVTNAHSRTPEDSSESGSGSEGGASASGGSGAKSP 110
            |.|:.:|:.:....:.|.|.:.:..:   :...::....|.|       .:||..|.|.|| |..
Zfish    24 RVHVFSRSRSACDELHLPPVLNVRCFSQSVVCFSSKESPPRD-------GDGGKKAVGESG-KRA 80

  Fly   111 GGAAGSGASSTSGADPPGGGSDKFLSCPKCGSACTQVETFVSSTRFVKCAKCNYFFVVLSEVETK 175
            .||.|||.          |||.  |.|||||..||.|||||||||||||.||::|||||||.::|
Zfish    81 SGAGGSGK----------GGSQ--LRCPKCGDPCTHVETFVSSTRFVKCEKCHHFFVVLSETDSK 133

  Fly   176 QRTKDEPKNQ--------RKPPPPPQKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHNLPQLQ 232
            :....|.::.        :||||||:||..||||.||||.:|||||:||||||||||::|||...
Zfish   134 KGLNKETESSEHVKFALAQKPPPPPKKIYAYLDKFVVGQSYAKKVLSVAVYNHYKRIYNNLPAAG 198

  Fly   233 NQGAGA---SNGAGGGLDGIPRPD------LLHITGIGHTLNSSPGNELPPKSPTQMGMGGGMGG 288
            .|.|.:   |:.:...|:...|.|      ||.|.||               ||         .|
Zfish   199 RQQAESEKQSSLSPRELEIRRREDEYRFTKLLQIAGI---------------SP---------HG 239

  Fly   289 PGLGAGLTGASSSNARGGGDNRSGSEILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDV 353
            ..|||.:...::..|:   .::.|.::||...||:|||||||::||||||||||:|||:||||||
Zfish   240 NALGASVQQQTNQQAQ---QDKRGGDVLDSAHTDIKLEKSNIVLLGPTGSGKTLLAQTLAKCLDV 301

  Fly   354 PFAICDCTTLTQAGYVGEDIESVISKLLQDANYNVERAQTGIVFLDEVDKIGAVPGIHQLRDVGG 418
            ||||||||||||||||||||||||:||||||||:||:||.||||||||||||:||||||||||||
Zfish   302 PFAICDCTTLTQAGYVGEDIESVIAKLLQDANYSVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGG 366

  Fly   419 EGVQQGMLKMLEGTVVNVPERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRLNEKYLGF 483
            ||||||:||:||||:|||||:|| ||||||||||||||||||||||:.||||:|:||.|||||||
Zfish   367 EGVQQGLLKLLEGTIVNVPEKNS-RKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGF 430

  Fly   484 GMPSTSGSGRRAAQSA------ASPMD--NDQEERDKCLTKVQARDLVEFGMIPEFVGRFPVIVP 540
            |.||..|.|||||.:|      .:.||  .:.||:|:.|..|:||||:|||||||||||.||:||
Zfish   431 GTPSNLGKGRRAAAAADLANTSGTEMDAMAEIEEKDRLLRIVEARDLIEFGMIPEFVGRLPVVVP 495

  Fly   541 FHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHTGARGLRSIMEQ 605
            .|||:..|||:||||||||:||||:||..:|:.:|..|.||:::||:||:||.|||||||||||:
Zfish   496 LHSLDEEMLVQILTEPRNAVVPQYQALFSMDKCELNVTSDALRAIARLALERKTGARGLRSIMEK 560

  Fly   606 LLLDPMFIVPGSDIRGVHITADYVKGSATPEYSR 639
            |||:|||.||.|||..|.:..|.|:|...|.|.|
Zfish   561 LLLEPMFEVPQSDIIAVELNKDVVQGKCEPRYIR 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4538NP_001287413.1 ClpX 140..638 CDD:224140 320/522 (61%)
AAA_2 327..537 CDD:285025 170/217 (78%)
ClpB_D2-small 544..631 CDD:198154 54/86 (63%)
clpxbXP_002667004.2 clpX 92..593 CDD:273047 324/530 (61%)
AAA_2 275..492 CDD:285025 170/217 (78%)
ClpB_D2-small 499..>570 CDD:198154 46/70 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594996
Domainoid 1 1.000 339 1.000 Domainoid score I1068
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 616 1.000 Inparanoid score I867
OMA 1 1.010 - - QHG49224
OrthoDB 1 1.010 - - D1040247at2759
OrthoFinder 1 1.000 - - FOG0002664
OrthoInspector 1 1.000 - - otm25380
orthoMCL 1 0.900 - - OOG6_101643
Panther 1 1.100 - - LDO PTHR48102
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2184
SonicParanoid 1 1.000 - - X1775
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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