DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and RGR

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_002912.2 Gene:RGR / 5995 HGNCID:9990 Length:295 Species:Homo sapiens


Alignment Length:297 Identity:73/297 - (24%)
Similarity:115/297 - (38%) Gaps:59/297 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 MIMIGMI----SWCG---NGVVIYIFATTKSLRTPANLLVINLAISDFGI----MITNTPMMGIN 110
            ::.:||:    :..|   |.:.|:.|..|..||||.:|||::||::|.||    ::..|..: :.
Human    16 VLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVAATSSL-LR 79

  Fly   111 LYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY-QVIVKGMAGRPMTIPLALGKIAYIW 174
            :....|..|...|..:...|.....:||.|...|:..|| ....:........:.|.|    ::|
Human    80 VSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAWNSAVSLVL----FVW 140

  Fly   175 FMSSIWCLAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIA 239
            ..|:.|...|..||..|..|...|.|.:||.:.|.|..|:|...|.|.:.:|||:...||     
Human   141 LSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSY----- 200

  Fly   240 AVSAHEKAMREQAKKMNVKSLRSSEDAEKSAEGKLAK-------VALVTITLWFMAWTPYLVINC 297
                   ::.||                     ||.|       ..|...|| .:.|.||.::..
Human   201 -------SLMEQ---------------------KLGKSGHLQVNTTLPARTL-LLGWGPYAILYL 236

  Fly   298 MGLF-KFEGLTPLNTIWGACFAKSAACYNPIVYGISH 333
            ..:. ....::|...:..|..||.....|.|.|.:.:
Human   237 YAVIADVTSISPKLQMVPALIAKMVPTINAINYALGN 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 73/297 (25%)
TM helix 1 52..78 CDD:320207 6/27 (22%)
TM helix 2 85..111 CDD:320207 9/29 (31%)
TM helix 3 123..153 CDD:320207 8/30 (27%)
TM helix 4 164..184 CDD:320207 5/19 (26%)
TM helix 5 211..240 CDD:320207 9/28 (32%)
TM helix 6 269..299 CDD:320207 9/36 (25%)
TM helix 7 308..333 CDD:320207 7/24 (29%)
RGRNP_002912.2 7tmA_Retinal_GPR 17..281 CDD:320200 73/296 (25%)
TM helix 1 18..44 CDD:320200 6/25 (24%)
TM helix 2 51..77 CDD:320200 9/25 (36%)
TM helix 3 92..122 CDD:320200 8/29 (28%)
TM helix 4 130..150 CDD:320200 5/23 (22%)
TM helix 5 177..206 CDD:320200 11/61 (18%)
TM helix 6 208..238 CDD:320200 7/30 (23%)
TM helix 7 248..273 CDD:320200 7/24 (29%)

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