DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and Rh3

DIOPT Version :9

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_524411.1 Gene:Rh3 / 42398 FlyBaseID:FBgn0003249 Length:383 Species:Drosophila melanogaster


Alignment Length:350 Identity:132/350 - (37%)
Similarity:202/350 - (57%) Gaps:5/350 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VTPDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVIN 91
            |.|:....|..:|..:|........:|....|...::|..|||:||::|:..||||||:|:||||
  Fly    35 VPPEELRHIPEHWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVIN 99

  Fly    92 LAISDFGIMITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGM 156
            ||..|| :|:..||:...|.:.:.:.||.:.|.|:..:||..|.::..:...|:.||:.||.:.|
  Fly   100 LAFCDF-MMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPM 163

  Fly   157 AGRPMTIPLALGKIAYIWFMSSIWCLA-PAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSI 220
            .|: ||...|:..|.:|:..::.|.:| ....|.|:||||.||||..|||..:::.|.::.....
  Fly   164 EGK-MTHGKAIAMIIFIYMYATPWVVACYTETWGRFVPEGYLTSCTFDYLTDNFDTRLFVACIFF 227

  Fly   221 FVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSEDAEK-SAEGKLAKVALVTITL 284
            |.:..|..:|.|.|..|:..|.:||||:|:|||||||:||||:.|..| :||.::||.|:....|
  Fly   228 FSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFL 292

  Fly   285 WFMAWTPYLVINCMGLFKFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCV 348
            :|.:||||.|::.:|.|..:. |||..|:..||..|..||.:|.||.||||:||:.|:::||...
  Fly   293 FFCSWTPYGVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLA 357

  Fly   349 FGKVDDGKSSDAQSQATASEAESKA 373
            ..:.....|:.|.:..|....::.|
  Fly   358 LNEKAPESSAVASTSTTQEPQQTTA 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 120/290 (41%)
TM helix 1 53..77 CDD:320207 9/23 (39%)
TM helix 2 86..108 CDD:320207 12/21 (57%)
TM helix 3 124..146 CDD:320207 5/21 (24%)
TM helix 4 168..184 CDD:320207 4/16 (25%)
TM helix 5 212..235 CDD:320207 5/22 (23%)
TM helix 6 275..297 CDD:320207 10/21 (48%)
TM helix 7 308..333 CDD:320207 11/24 (46%)
Rh3NP_524411.1 7tm_4 66..>191 CDD:304433 48/126 (38%)
7tm_1 75..338 CDD:278431 109/264 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461670
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BCHK
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I3575
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6356
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24240
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
76.890

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