DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and parapinopsinb

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001428334.1 Gene:parapinopsinb / 368725 ZFINID:ZDB-GENE-030616-134 Length:339 Species:Danio rerio


Alignment Length:328 Identity:87/328 - (26%)
Similarity:146/328 - (44%) Gaps:32/328 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMIT-NTPMMGINL--YFE 114
            |:..|.:..:.|...|..||.:....|.||.|.|..::|||::|.|..:| :.|.:..|.  |:.
Zfish    32 LSLLMAVFSITSVVLNATVIVVTLRHKQLRQPLNFALVNLAVADLGTTLTGSVPSVVTNAVGYYI 96

  Fly   115 TWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSI 179
            |..:|   |.:.....:.||.|::.::.:|:::|..|:.:.:.........|.|.:...|..|.|
Zfish    97 TGRIG---CVLEGFCVAFFGISALCTVALIAVERLFVVCRPLGSITFQSRHAAGGLLSCWLWSLI 158

  Fly   180 WCLAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSY-WFIIAAVSA 243
            |...|..||..|..||..||||..:..|:....||:|.|....:.:|..:|..|| |.:.     
Zfish   159 WNTPPLLGWGSYQLEGAGTSCGPHWQSRELRDVSYIICYFSVCFAVPFAIILVSYSWLLY----- 218

  Fly   244 HEKAMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFE-GLT 307
               .:|:.||        ....|...||.::|.:.::.:..:.::|.||..:....:.|.| .|.
Zfish   219 ---TLRQVAK--------VGGGAAARAEARVAWMVVMMVLAFLVSWLPYAALALTVVSKPEVQLA 272

  Fly   308 PLNTIWGACFAKSAACYNPIVYGISHPKY-RLALKEKCPCCVFGKVDDGKSSD--AQSQATASEA 369
            .|..:.....|||:..|||::|...:.:: |.|:    |..:.|| |...|.|  ::.|...|..
Zfish   273 VLVKVLPIYMAKSSTVYNPLIYIYMNKQFQRYAI----PFLMCGK-DPWPSEDDVSEVQTVVSPL 332

  Fly   370 ESK 372
            .:|
Zfish   333 NNK 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 77/292 (26%)
TM helix 1 52..78 CDD:320207 6/24 (25%)
TM helix 2 85..111 CDD:320207 8/26 (31%)
TM helix 3 123..153 CDD:320207 7/29 (24%)
TM helix 4 164..184 CDD:320207 6/19 (32%)
TM helix 5 211..240 CDD:320207 9/29 (31%)
TM helix 6 269..299 CDD:320207 6/29 (21%)
TM helix 7 308..333 CDD:320207 8/24 (33%)
parapinopsinbNP_001428334.1 None

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