Protein Alignment ninaE and Rrh

DIOPT Version :10

• Sequence 1: NP_524407.1
• Gene: ninaE / 42367
• FlyBaseID: FBgn0002940
• Length: 373
• Species: Drosophila melanogaster
• Sequence 2: NP_001401989.1
• Gene: Rrh / 310869
• RGDID: 1308948
• Length: 337
• Species: Rattus norvegicus
• Alignment Length: 298
• Identity: 90/298 - (30%)
• Similarity: 148/298 - (49%)
• Gaps: 16/298 - (5%)

  Fly    52 ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNTPMMGINLYFETW 116
            |:.||:|:.|:||...|.:|:.||...|.||||.|.::||||.:|.|:.....||...:....:|
  Rat    27 IIAAYLIVAGIISILSNIIVLGIFIKYKELRTPTNAVIINLAFTDIGVSSIGYPMSAASDLHGSW 91

  Fly   117 VLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIWC 181
            ..|...|.:||||...||..||..:.:::||||..|.....||.||....|..:...|.....|.
  Rat    92 KFGHAGCQVYAGLNIFFGMVSIGLLTVVALDRYLTISCPDVGRRMTGNTYLSMVLGAWINGLFWA 156

  Fly   182 LAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEK 246
            |.|..||:.|.|:....:|.|::.:.|.:..||.:...:..:.:||.::.|.|:.:       .:
  Rat   157 LMPIVGWASYAPDPTGATCTINWRKNDTSFVSYTMMVIVVNFIVPLTVMFYCYYHV-------SQ 214

  Fly   247 AMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVI---NCMGLFKFEGLTP 308
            :||..|    ..:..:..:.:.:.:..:.|::::.|.::.:||:||.|:   .|.|..|  .:.|
  Rat   215 SMRLSA----ASNCTTHLNRDWAHQADVTKMSVMMILMFLLAWSPYSVVCLWACFGNPK--KIPP 273

  Fly   309 LNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC 346
            ...|....||||:..|||.:|..::.|:|.|:.....|
  Rat   274 SLAIIAPLFAKSSTFYNPCIYVAANKKFRKAMFAMLKC 311

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ninaE	NP_524407.1	7tmA_photoreceptors_insect	52..340	CDD:320207	88/290 (30%)
		TM helix 1	52..78	CDD:320207	11/25 (44%)
		TM helix 2	85..111	CDD:320207	9/25 (36%)
		TM helix 3	123..153	CDD:320207	13/29 (45%)
		TM helix 4	164..184	CDD:320207	4/19 (21%)
		TM helix 5	211..240	CDD:320207	6/28 (21%)
		TM helix 6	269..299	CDD:320207	8/32 (25%)
		TM helix 7	308..333	CDD:320207	10/24 (42%)
Rrh	NP_001401989.1	7tmA_Peropsin	26..305	CDD:320201	88/290 (30%)
		TM helix 1	27..53	CDD:320201	11/25 (44%)
		TM helix 2	60..87	CDD:320201	9/26 (35%)
		TM helix 3	98..128	CDD:320201	13/29 (45%)
		TM helix 4	141..159	CDD:320201	4/17 (24%)
		TM helix 5	186..216	CDD:320201	6/36 (17%)
		TM helix 6	233..263	CDD:320201	7/29 (24%)
		TM helix 7	273..298	CDD:320201	10/24 (42%)