DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and opn1sw1

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_571394.2 Gene:opn1sw1 / 30582 ZFINID:ZDB-GENE-991109-25 Length:336 Species:Danio rerio


Alignment Length:362 Identity:89/362 - (24%)
Similarity:168/362 - (46%) Gaps:58/362 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 AHLISPYWNQFPAMDPIWAKIL-TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS 95
            |..:||:..:...:.|.||..| .|:|..:.::....||:|:::....|.||.|.|.:::|::::
Zfish    11 ASKVSPFEGEQYHIAPKWAFYLQAAFMGFVFIVGTPMNGIVLFVTMKYKKLRQPLNYILVNISLA 75

  Fly    96 DFGIMITNTPMMGINLYFET--------------WVLGPMMCDIYAGLGSAFGCSSIWSMCMISL 146
            .|              .|:|              :.||..:|.:.|.:||..|..:.||:.:::.
Zfish    76 GF--------------IFDTFSVSQVFVCAARGYYFLGYTLCAMEAAMGSIAGLVTGWSLAVLAF 126

  Fly   147 DRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSCGIDYLER--DW 209
            :||.||.|...........|:|.:.:.|.:.:.....|.||||||:|||..|:||.|:..:  ::
Zfish   127 ERYVVICKPFGSFKFGQGQAVGAVVFTWIIGTACATPPFFGWSRYIPEGLGTACGPDWYTKSEEY 191

  Fly   210 NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSEDAEKSAEGKL 274
            |..||..|..:..:.:|:.:|.:||..::.|:.|             |.:.::..::.:.||.::
Zfish   192 NSESYTYFLLVTCFMMPMTIIIFSYSQLLGALRA-------------VAAQQAESESTQKAEREV 243

  Fly   275 AKVALVTITLWFMAWTPYLVINCMGLFKFEGLTPLNTIW-----GACFAKSAACYNPIVYGISHP 334
            :::.:|.:..:.:.:.||.|.    ...|......|..:     .|.|:||:..|||::|...:.
Zfish   244 SRMVVVMVGSFVLCYAPYAVT----AMYFANSDEPNKDYRLVAIPAFFSKSSCVYNPLIYAFMNK 304

  Fly   335 KYRLALKEKCPCCVFGKVDDGKSSDAQSQATASEAES 371
            ::...:.|    .||||..| :||:..|:...|...:
Zfish   305 QFNACIME----TVFGKKID-ESSEVSSKTETSSVSA 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 73/309 (24%)
TM helix 1 52..78 CDD:320207 6/26 (23%)
TM helix 2 85..111 CDD:320207 3/25 (12%)
TM helix 3 123..153 CDD:320207 10/29 (34%)
TM helix 4 164..184 CDD:320207 3/19 (16%)
TM helix 5 211..240 CDD:320207 7/28 (25%)
TM helix 6 269..299 CDD:320207 6/29 (21%)
TM helix 7 308..333 CDD:320207 9/29 (31%)
opn1sw1NP_571394.2 7tm_GPCRs 31..310 CDD:475119 73/309 (24%)
TM helix 1 33..57 CDD:410628 5/23 (22%)
TM helix 2 66..88 CDD:410628 5/35 (14%)
TM helix 3 104..126 CDD:410628 6/21 (29%)
TM helix 4 148..164 CDD:410628 2/15 (13%)
TM helix 5 194..217 CDD:410628 6/22 (27%)
TM helix 6 244..266 CDD:410628 4/25 (16%)
TM helix 7 278..303 CDD:410628 8/24 (33%)

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