DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and opn1sw2

DIOPT Version :9

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_571267.1 Gene:opn1sw2 / 30435 ZFINID:ZDB-GENE-990604-40 Length:354 Species:Danio rerio


Alignment Length:340 Identity:85/340 - (25%)
Similarity:150/340 - (44%) Gaps:52/340 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNTPMMGINLYFETWV 117
            ::|:|:.:.:.....|.:.|......|.||:..|.:::|||||:..:.:..:.:.....|.:.:|
Zfish    47 MSAFMLFLFIAGTAINVLTIVCTIQYKKLRSHLNYILVNLAISNLWVSVFGSSVAFYAFYKKYFV 111

  Fly   118 LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIWCL 182
            .||:.|.|.....:..|..|:||:.:::|:|:.||.|.:.......|.|:......|.|:....|
Zfish   112 FGPIGCKIEGFTSTIGGMVSLWSLAVVALERWLVICKPLGNFTFKTPHAIAGCILPWCMALAAGL 176

  Fly   183 APAFGWSRYVPEGNLTSCGIDY--LERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHE 245
            .|..|||||:|||...|||.|:  ....:|..||::|...|.:.:|...|.:.|..::..:....
Zfish   177 PPLLGWSRYIPEGLQCSCGPDWYTTNNKFNNESYVMFLFCFCFAVPFSTIVFCYGQLLITLKLAA 241

  Fly   246 KAMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEGLTPLN 310
            ||..:.|             :.:.||.::.|:.:|.:..:.:.|.||.:.               
Zfish   242 KAQADSA-------------STQKAEREVTKMVVVMVFGFLICWGPYAIF--------------- 278

  Fly   311 TIW-----GA-----------CFAKSAACYNPIVYGISHPKYRLALKEKCPCCVFGK--VDDGKS 357
            .||     ||           |..|::..|||::|.:.:.::|..:.:    .||.|  .:|..|
Zfish   279 AIWVVSNRGAPFDLRLATIPSCLCKASTVYNPVIYVLMNKQFRSCMMK----MVFNKNIEEDEAS 339

  Fly   358 SDAQSQATASEAESK 372
            |.:|....:|.|..|
Zfish   340 SSSQVTQVSSVAPEK 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 75/304 (25%)
TM helix 1 53..77 CDD:320207 4/23 (17%)
TM helix 2 86..108 CDD:320207 6/21 (29%)
TM helix 3 124..146 CDD:320207 5/21 (24%)
TM helix 4 168..184 CDD:320207 3/15 (20%)
TM helix 5 212..235 CDD:320207 6/22 (27%)
TM helix 6 275..297 CDD:320207 5/21 (24%)
TM helix 7 308..333 CDD:320207 10/40 (25%)
opn1sw2NP_571267.1 7tm_1 62..313 CDD:278431 71/278 (26%)
7tm_4 <129..331 CDD:304433 57/233 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48050
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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