DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and Opn4

DIOPT Version :9

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_620215.1 Gene:Opn4 / 192223 RGDID:621701 Length:474 Species:Rattus norvegicus


Alignment Length:358 Identity:128/358 - (35%)
Similarity:188/358 - (52%) Gaps:25/358 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SFAVAAAQLGPHFAPLSNGSV---VDKVTPDMAHLISPYWNQFPAMD-PIWAK-ILTAYMIMIGM 62
            ||..:.|.|...:....|.||   :..|:|....|.:..|..||.:| |..|. .|...::::|:
  Rat    18 SFTASPALLQGIWNSTQNISVRVQLLSVSPTTPGLQAAAWVPFPTVDVPDHAHYTLGTVILLVGL 82

  Fly    63 ISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNTPMMGINLYFETWVLGPMMCDIYA 127
            ....||..|||.|...:.||||||:|:||||:|||.:..|..|:...:..::.|:.|...|..||
  Rat    83 TGMLGNLTVIYTFCRNRGLRTPANMLIINLAVSDFLMSFTQAPVFFASSLYKKWLFGETGCKFYA 147

  Fly   128 GLGSAFGCSSIWSMCMISLDRYQVIVK-----GMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFG 187
            ..|:.||..|:.::..|::|||.||.:     ||..:..|..:.||    :|..:..|.|.|.||
  Rat   148 FCGAVFGIVSMITLTAIAMDRYLVITRPLATIGMRSKRRTALVLLG----VWLYALAWSLPPFFG 208

  Fly   188 WSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQA 252
            ||.|||||.||||..||:......|:|.:....||:::||.:|.:.|.||..|:....:|    .
  Rat   209 WSAYVPEGLLTSCSWDYVTFTPLVRAYTMLLFCFVFFLPLLIIIFCYIFIFRAIRETGRA----C 269

  Fly   253 KKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEG----LTPLNTIW 313
            :......||..:.....:|.|:|||||:.|.|:.::|.||..:..:|   |.|    |||..:..
  Rat   270 EGCGESPLRRRQWQRLQSEWKMAKVALIVILLFVLSWAPYSTVALVG---FAGYSHILTPYMSSV 331

  Fly   314 GACFAKSAACYNPIVYGISHPKYRLALKEKCPC 346
            .|..||::|.:|||:|.|:|||||.|:.:..||
  Rat   332 PAVIAKASAIHNPIIYAITHPKYRAAIAQHLPC 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 109/296 (37%)
TM helix 1 53..77 CDD:320207 8/23 (35%)
TM helix 2 86..108 CDD:320207 11/21 (52%)
TM helix 3 124..146 CDD:320207 7/21 (33%)
TM helix 4 168..184 CDD:320207 4/15 (27%)
TM helix 5 212..235 CDD:320207 7/22 (32%)
TM helix 6 275..297 CDD:320207 10/21 (48%)
TM helix 7 308..333 CDD:320207 10/24 (42%)
Opn4NP_620215.1 7tm_4 78..>245 CDD:304433 66/170 (39%)
7tm_1 87..347 CDD:278431 100/270 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 428..474
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349210
Domainoid 1 1.000 186 1.000 Domainoid score I3256
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69152
Inparanoid 1 1.050 210 1.000 Inparanoid score I3580
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - otm44480
orthoMCL 1 0.900 - - OOG6_104608
Panther 1 1.100 - - O PTHR24240
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X120
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.900

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