DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and RRH

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_006574.1 Gene:RRH / 10692 HGNCID:10450 Length:337 Species:Homo sapiens


Alignment Length:302 Identity:89/302 - (29%)
Similarity:149/302 - (49%) Gaps:24/302 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITNTPMMGINLYFETW 116
            |:..|:||.||||...|.:|:.||...|.||||.|.::||||::|.|:.....||...:..:.:|
Human    27 IVATYLIMAGMISIISNIIVLGIFIKYKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLYGSW 91

  Fly   117 VLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGKIAYIWFMSSIWC 181
            ..|...|.:||||...||.:||..:.::::|||..|.....||.||....:|.|...|.....|.
Human    92 KFGYAGCQVYAGLNIFFGMASIGLLTVVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWA 156

  Fly   182 LAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAH-- 244
            |.|..||:.|.|:....:|.|::.:.|.:..||.:......:.:||.::.|.|:.:..::..|  
Human   157 LMPIIGWASYAPDPTGATCTINWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTT 221

  Fly   245 ----EKAMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KFE 304
                |...|:.:.:::|                 .|::::.|.::.:||:||.::.....| ..:
Human   222 SDCTESLNRDWSDQIDV-----------------TKMSVIMICMFLVAWSPYSIVCLWASFGDPK 269

  Fly   305 GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC 346
            .:.|...|....||||:..|||.:|.:::.|:|.|:.....|
Human   270 KIPPPMAIIAPLFAKSSTFYNPCIYVVANKKFRRAMLAMFKC 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 87/294 (30%)
TM helix 1 52..78 CDD:320207 12/25 (48%)
TM helix 2 85..111 CDD:320207 9/25 (36%)
TM helix 3 123..153 CDD:320207 12/29 (41%)
TM helix 4 164..184 CDD:320207 5/19 (26%)
TM helix 5 211..240 CDD:320207 6/28 (21%)
TM helix 6 269..299 CDD:320207 6/29 (21%)
TM helix 7 308..333 CDD:320207 10/24 (42%)
RRHNP_006574.1 7tmA_Peropsin 26..305 CDD:320201 87/294 (30%)
TM helix 1 27..53 CDD:320201 12/25 (48%)
TM helix 2 60..87 CDD:320201 9/26 (35%)
TM helix 3 98..128 CDD:320201 12/29 (41%)
TM helix 4 141..159 CDD:320201 5/17 (29%)
TM helix 5 186..216 CDD:320201 6/29 (21%)
TM helix 6 233..263 CDD:320201 7/46 (15%)
TM helix 7 273..298 CDD:320201 10/24 (42%)

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