DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and LOC100495677

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_002932874.2 Gene:LOC100495677 / 100495677 XenbaseID:XB-GENE-29082783 Length:337 Species:Xenopus tropicalis


Alignment Length:343 Identity:67/343 - (19%)
Similarity:118/343 - (34%) Gaps:106/343 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 IWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISD--FGIMITNTPMMGIN 110
            ::|.|:.|  ..||.:.  .|.:::.:||:...|||....|.:||:|.|  ||:.:  .|:...|
 Frog     7 LFATIMIA--TSIGTVG--ANALLLVLFASHLKLRTDTWALTLNLSICDLIFGMCV--VPIAIYN 65

  Fly   111 LYFETWVL--GPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPMTIPLALGK---- 169
            ..|:..:.  |.:.|.:...|......:|:.|:...::|::..|     |.|:.....:.|    
 Frog    66 SLFQGGIFAEGGIACQLLGFLFVLLQLASLNSLVWATIDKFAEI-----GFPLRYAQLITKKRIM 125

  Fly   170 --IAYIW------------------FMSSIWCLAPAFGWSR------------YVPEGNLTSCGI 202
              :|.:|                  |...::...||||.|.            .||   :|...|
 Frog   126 FILAILWIYAIVVAALPFMGFGVYSFNKDVYMCLPAFGPSTTAYSVLFLTVGVLVP---ITGISI 187

  Fly   203 DYLE-----RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRS 262
            .||.     |....|...:......||:|:    .||:                           
 Frog   188 LYLSIIHIARYQAKRGTFVCNDQHCYYVPI----RSYF--------------------------- 221

  Fly   263 SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEG---LTPLNTIWGACFAKSAACY 324
                      :...|.:|:.....:.|.|.::|:....|....   :..:.:||   .....:..
 Frog   222 ----------RNTLVLIVSAFYLLVCWLPSVIISFYETFYTSNVPVIAKMVSIW---LVVLTSTL 273

  Fly   325 NPIVYGISHPKYRLALKE 342
            ||.:..::...||.||:|
 Frog   274 NPWINSLAQRNYRRALRE 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 63/335 (19%)
TM helix 1 52..78 CDD:320207 7/25 (28%)
TM helix 2 85..111 CDD:320207 8/27 (30%)
TM helix 3 123..153 CDD:320207 5/29 (17%)
TM helix 4 164..184 CDD:320207 4/43 (9%)
TM helix 5 211..240 CDD:320207 6/28 (21%)
TM helix 6 269..299 CDD:320207 5/29 (17%)
TM helix 7 308..333 CDD:320207 4/24 (17%)
LOC100495677XP_002932874.2 7tm_classA_rhodopsin-like 8..277 CDD:410626 62/326 (19%)
TM helix 1 8..33 CDD:410626 8/28 (29%)
TM helix 2 40..66 CDD:410626 8/27 (30%)
TM helix 3 80..110 CDD:410626 6/34 (18%)
TM helix 4 123..142 CDD:410626 2/18 (11%)
TM helix 5 166..191 CDD:410626 5/27 (19%)
TM helix 6 217..248 CDD:410626 7/71 (10%)
TM helix 7 257..277 CDD:410626 4/22 (18%)

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