DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and tmtopsb

DIOPT Version :10

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001299608.2 Gene:tmtopsb / 100334480 ZFINID:ZDB-GENE-091118-50 Length:448 Species:Danio rerio


Alignment Length:319 Identity:84/319 - (26%)
Similarity:146/319 - (45%) Gaps:31/319 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 AHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISD 96
            |||...:.:.  ::.|....::...:..||...:..|.:|:.:|...|.||:|.|.|:|::::||
Zfish    73 AHLDENHSDH--SLSPTGHLVVAVCLGFIGTFGFLNNTLVLVLFCRYKVLRSPMNCLLISISVSD 135

  Fly    97 FGIMITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGRPM 161
            ..:.:..||..........|::|...|..|..:.|..|..|:.|:.::|.:||..::........
Zfish   136 LLVCVLGTPFSFAASTQGRWLIGRAGCVWYGFINSFLGVVSLISLAVLSYERYCTMMGSTQADST 200

  Fly   162 TIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIFYSIFVYYIP 226
            .....:..||:.|..|.:|.|.|.||||.|.|||..|:|.:::..|..|..||::...:|...:|
Zfish   201 NYRKVVIGIAFSWIYSMVWTLPPLFGWSCYGPEGPGTTCSVNWAARTPNNVSYIVCLFVFCLILP 265

  Fly   227 LFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITL---WFMA 288
            ..:|.|||..::.|::        |..::|....|..|.          :|..:.:|:   :.:.
Zfish   266 FIVIVYSYGRLLQAIT--------QVSRINTVVSRKREQ----------RVLFMVVTMVVCYLLC 312

  Fly   289 WTPYLVINCMGLFKFEGL-TPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC 346
            |.||.::..:..|...|| ||..:|..:..|||:...|||:|...:       |:.|.|
Zfish   313 WLPYGIMALLATFGHPGLVTPAASIVPSLLAKSSTVINPIIYIFMN-------KQFCRC 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 77/291 (26%)
TM helix 1 52..78 CDD:320207 5/25 (20%)
TM helix 2 85..111 CDD:320207 7/25 (28%)
TM helix 3 123..153 CDD:320207 9/29 (31%)
TM helix 4 164..184 CDD:320207 6/19 (32%)
TM helix 5 211..240 CDD:320207 8/28 (29%)
TM helix 6 269..299 CDD:320207 5/32 (16%)
TM helix 7 308..333 CDD:320207 9/24 (38%)
tmtopsbNP_001299608.2 None

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