DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaE and opn4xa

DIOPT Version :9

Sequence 1:NP_524407.1 Gene:ninaE / 42367 FlyBaseID:FBgn0002940 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001243006.1 Gene:opn4xa / 100331502 ZFINID:ZDB-GENE-110622-1 Length:531 Species:Danio rerio


Alignment Length:363 Identity:123/363 - (33%)
Similarity:186/363 - (51%) Gaps:45/363 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PDMAHLISPYWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA 93
            ||.||.|..:                 ::.:||.:...||.:|:|.|.:.|.||||.|..::|||
Zfish    18 PDHAHYIVAF-----------------FVAVIGALGVIGNLLVMYAFFSNKKLRTPPNYFIMNLA 65

  Fly    94 ISDFGIMITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGM-- 156
            :|||.:.||.:|:..||..::.||.|.|.|.:||..|:.||.:|:.::..||:|||.||.|.:  
Zfish    66 VSDFLMAITQSPIFFINCMYKEWVFGEMGCKMYAFCGALFGITSMINLLAISIDRYIVITKPLQA 130

  Fly   157 ----AGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSCGIDYLERDWNPRSYLIF 217
                :||...|     .|..:|..|..|.|||..|||.|:|||.:|||..||:......:||.:.
Zfish   131 IRWTSGRRTLI-----IILVVWIYSLAWSLAPLIGWSSYIPEGLMTSCTWDYVTSTPANKSYTLM 190

  Fly   218 YSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSSEDAEKSAEGKLAKVALVTI 282
            ...||::|||.:|.|.|:|:..|:.:..:.:.:....:...:|...:..:  .|.||||:|.|.|
Zfish   191 LCCFVFFIPLGIISYCYFFMFLAIRSASRDVEKLGSHVRKTTLIQQQSIK--TEWKLAKIAFVVI 253

  Fly   283 TLWFMAWTPYLVINCMGLFKFEG----LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEK 343
            .::.::|:||.   |:.|..:.|    |:|.:....|..||::|.|||.:|.|...|||..|.||
Zfish   254 IVFVLSWSPYA---CVTLIAWAGYSHVLSPYSKAVPAVIAKASAIYNPFIYAIIRSKYRDTLAEK 315

  Fly   344 CPCCVF--------GKVDDGKSSDAQSQATASEAESKA 373
            .||..|        ..|.:.:||..:...:...:.|||
Zfish   316 VPCLHFLAQSSRKDVSVSNSESSFREHMLSRQSSGSKA 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaENP_524407.1 7tmA_photoreceptors_insect 52..340 CDD:320207 106/297 (36%)
TM helix 1 53..77 CDD:320207 7/23 (30%)
TM helix 2 86..108 CDD:320207 10/21 (48%)
TM helix 3 124..146 CDD:320207 7/21 (33%)
TM helix 4 168..184 CDD:320207 5/15 (33%)
TM helix 5 212..235 CDD:320207 9/22 (41%)
TM helix 6 275..297 CDD:320207 8/21 (38%)
TM helix 7 308..333 CDD:320207 10/24 (42%)
opn4xaNP_001243006.1 7tmA_Melanopsin 23..312 CDD:320458 107/315 (34%)
TM helix 1 24..50 CDD:320458 8/42 (19%)
TM helix 2 57..83 CDD:320458 11/25 (44%)
TM helix 3 95..125 CDD:320458 13/29 (45%)
TM helix 4 137..159 CDD:320458 9/26 (35%)
TM helix 5 184..214 CDD:320458 11/29 (38%)
TM helix 6 240..270 CDD:320458 13/34 (38%)
TM helix 7 280..305 CDD:320458 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590440
Domainoid 1 1.000 192 1.000 Domainoid score I3159
eggNOG 1 0.900 - - E33208_3BCHK
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I3623
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389088at33208
OrthoFinder 1 1.000 - - FOG0001799
OrthoInspector 1 1.000 - - mtm6356
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24240
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X120
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

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