DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and Ivd

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_062800.1 Gene:Ivd / 56357 MGIID:1929242 Length:424 Species:Mus musculus


Alignment Length:394 Identity:152/394 - (38%)
Similarity:228/394 - (57%) Gaps:9/394 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LCIARRSLNARQI-ASLSALSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQIR----QMG 68
            |.:.||:.:...: ..::.|:|..:.|:.:...|....|:..|.:.|:.:.:  |.:|    |:|
Mouse    24 LAVPRRAHSILPVDDDINGLNEEQKQLRHTISKFLQENLAPKAQEIDQTNDF--KNLREFWKQLG 86

  Fly    69 ELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQKKDYI 133
            .|||:.:..|.:.||:||.|:.:.:.||||||...:.|:....:::|.:..::..||:|||:.|:
Mouse    87 SLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYL 151

  Fly   134 TPFTTGERVGCFALSEPGNGSDAGAASTIATDKGDHFVLNGTKAWITNAFEAEAAIVFATTNKQL 198
            ....:||.:|..|:|||..|||..:....|..||||:||||.|.||||..:|:..:|:|.|:...
Mouse   152 PKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTA 216

  Fly   199 --KHKGISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTL 261
              ..:||:||||.|...|||..||.||||:|||:||:|:||||.||..|:|.:...|..:.|..|
Mouse   217 VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGVYVLMSGL 281

  Fly   262 DAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARLLTWRAAW 326
            |..|:.:||..|||.||.|:..:.|...|:|||:.|.:.|.:|.|:|||...:.::|...:..|.
Mouse   282 DLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYTRLMASRQYVYNVAK 346

  Fly   327 LKDQKQPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQ 391
            ..|:.....|:.|...|.|:|.||..:...||.|||.||:.|....|..|||::.||..||||::
Mouse   347 ACDEGHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYEIGAGTSEVR 411

  Fly   392 RLVI 395
            ||||
Mouse   412 RLVI 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 148/373 (40%)
IvdNP_062800.1 IVD 42..421 CDD:173845 149/376 (40%)

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