DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and Acox1

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_059036.1 Gene:Acox1 / 50681 RGDID:619757 Length:661 Species:Rattus norvegicus


Alignment Length:399 Identity:92/399 - (23%)
Similarity:146/399 - (36%) Gaps:89/399 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 IRQMGELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQ 128
            :::|.|.|   ::.|||:......|:|..:..             :.:|.|:::..||:.|..||
  Rat    71 VKKMREYG---ISDPEEIMWFKKLYLANFVEP-------------VGLNYSMFIPTLLNQGTTAQ 119

  Fly   129 KKDYITPFTTGERVGCFALSEPGNGSDAGAASTIAT--DKGDHFVLNGTKA----WITNAF--EA 185
            ::.::.|....:.:|.:|.:|.|:|:......|.||  .|...|:||....    |.....  .:
  Rat   120 QEKWMRPSQELQIIGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTS 184

  Fly   186 EAAIVFATTNKQLKHKGISAFIVP-------KATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPK 243
            ..|||.|....|.:..|:.||:||       |...|.::|....|.|........|..::..:|:
  Rat   185 NHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPR 249

  Fly   244 ENMLGE------PGFGFKIAMQTLDAGR--------IGIAGQALGIGQAALELAVDY-AQKRQAF 293
            ||||.:      .|...|.....|..|.        :|.|.|:|   ..|..:|:.| |.:||:.
  Rat   250 ENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSL---SKACTIAIRYSAVRRQSE 311

  Fly   294 GK------PIAKLQSIQQKIADMSLAMESARLLTWRAAWLKDQKQPYTKEAAM------------ 340
            .|      .|...|:.|.|:..: ||...|.....|          |.||..:            
  Rat   312 IKQSEPEPQILDFQTQQYKLFPL-LATAYAFHFVGR----------YMKETYLRINESIGQGDLS 365

  Fly   341 ------AKLAASEAATLCS-----HQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLV 394
                  |..|..:|.|..:     .:|....||.||.........|........:||.:.:..|.
  Rat   366 ELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQ 430

  Fly   395 IAGSILKEY 403
            .|..::|.|
  Rat   431 TARFLMKIY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 90/395 (23%)
Acox1NP_059036.1 AXO 3..638 CDD:173839 92/399 (23%)
Microbody targeting signal. /evidence=ECO:0000255 659..661
Blue background indicates that the domain is not in the aligned region.

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