DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and ivd

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001011380.1 Gene:ivd / 496848 XenbaseID:XB-GENE-1008677 Length:419 Species:Xenopus tropicalis


Alignment Length:410 Identity:149/410 - (36%)
Similarity:244/410 - (59%) Gaps:15/410 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQSVLTRSLCIARRSLN-----ARQIASLS------ALSETHQMLQKSCRDFANNELSGNAAKFD 54
            |.::|.:::.::|.||.     :|:.:.:|      .|::..:.|:::...|..:.|:..|.:.|
 Frog     1 MAALLRKAVGVSRLSLPVLSQWSRRCSGISVDDTVNGLNDEQKQLRQTLHRFCQDHLNPVANEID 65

  Fly    55 REHLYPEKQI--RQMGELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYL 117
            :::.:.|.:.  :::|||||:.:..|.|.||:.:.|:.:.:.:|||||..|:.|:....:::|.:
 Frog    66 QKNNFAEMRSFWKKLGELGVLGITAPVEYGGSAMGYLEHVLVVEEISRASAAVGLSYGAHSNLCI 130

  Fly   118 GPLLSFGNDAQKKDYITPFTTGERVGCFALSEPGNGSDAGAASTIATDKGDHFVLNGTKAWITNA 182
            ..::..||:|||:.|:....:||.:|..|:|||.:|||..:....|..|||::||||.|.||||.
 Frog   131 NQIVRNGNEAQKEKYLPKLISGEYIGALAMSEPNSGSDVVSMRLKAEKKGDYYVLNGNKFWITNG 195

  Fly   183 FEAEAAIVFATT--NKQLKHKGISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKEN 245
            .:|:..:|:..|  :.|....||:||:|.|...|||..:|.||||:|||:||:|:||||.:|::|
 Frog   196 PDADVLVVYVKTDPSAQPASHGITAFLVEKGMPGFSTAQKLDKLGMRGSNTCELVFEDCKIPEQN 260

  Fly   246 MLGEPGFGFKIAMQTLDAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADM 310
            :||..|.|..:.|..||..|:.::|..|||.||.|:.|:.|...|:|||:.|...|.:|.|:|||
 Frog   261 VLGHLGKGVYVLMSGLDLERLVLSGGPLGIMQAVLDHAIPYLHTREAFGQKIGHFQLMQGKMADM 325

  Fly   311 SLAMESARLLTWRAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHY 375
            ...:.:.|...:..|...||....:|:.|...|.::|.||..:...||.|||.||:.|....|..
 Frog   326 YTRLAACRQYVYNVAKACDQGHFNSKDCAGVILYSAECATQVALDGIQCLGGNGYINDYPMGRFL 390

  Fly   376 RDARITEIYEGTSEIQRLVI 395
            |||::.||..||||::|::|
 Frog   391 RDAKLYEIGAGTSEVRRMLI 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 141/371 (38%)
ivdNP_001011380.1 IVD 37..416 CDD:173845 142/374 (38%)

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