Protein Alignment Arc42 and gcdhb

DIOPT Version :10

• Sequence 1: NP_650840.1
• Gene: Arc42 / 42364
• FlyBaseID: FBgn0038742
• Length: 405
• Species: Drosophila melanogaster
• Sequence 2: NP_001429839.1
• Gene: gcdhb / 450003
• ZFINID: ZDB-GENE-041010-117
• Length: 440
• Species: Danio rerio
• Alignment Length: 379
• Identity: 117/379 - (30%)
• Similarity: 187/379 - (49%)
• Gaps: 16/379 - (4%)

  Fly    27 LSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQIRQMGELGVMAVAIPEELGGTGLDYVAY 91
            |:|...|::.|.|.:...:|.......:|..::..:.:.:||||||:...| :..|..|..||||
Zfish    62 LTEEEIMIRDSFRTYCQEKLMPRILMANRNEIFHREIVSEMGELGVLGPTI-KGYGCAGTSYVAY 125

  Fly    92 AIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQKKDYITPFTTGERVGCFALSEPGNGSDA 156
            .:...|:.|..:....:|||.:||.:.|:.::|.:.||:.|:.....||.:|||.|:||.:|||.
Zfish   126 GLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRLAQGEILGCFGLTEPNHGSDP 190

  Fly   157 GAASTIA--TDKGDHFVLNGTKAWITNAFEAEAAIVFATTNKQLKHKGISAFIVPKATKGFSLGK 219
            |:..|.|  ......|.|.|:|.||||:..|:..:|:|    :.:...:..||:.:..||.|..|
Zfish   191 GSMETKAKYNSSSRTFTLTGSKTWITNSPVADICVVWA----KCEDGKVRGFILERGMKGLSTPK 251

  Fly   220 KEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTLDAGRIGIAGQALGIGQAALELAV 284
            .|.|..:|.|:|..:|.::..||:||:|.:.. |.......|:..|.|||..|||..:.......
Zfish   252 IEGKFSLRASATGMIIMDEVEVPEENLLPKAS-GLAGPFGCLNNARYGIAWGALGAAEFCFHATR 315

  Fly   285 DYAQKRQAFGKPIAKLQSIQQKIADM----SLAMESARLLTWRAAWLKDQKQPYTKEAAMAKLAA 345
            .|...|..||.|:|:.|.:|:|:|||    :|.::|...|    ..|.|.|:...:..::.|..:
Zfish   316 QYTLDRIQFGVPLARNQLMQKKMADMLTEITLGLQSCLQL----GRLIDDKKAAPEMISLLKRNS 376

  Fly   346 SEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVIAGSI 399
            ...|...:.|...:|||.|...:....||..:......||||.:|..|::..:|
Zfish   377 CGKALDIARQARDMLGGNGIADEYHIIRHVLNLEAVNTYEGTHDIHALILGRAI 430

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Arc42	NP_650840.1	SCAD_SBCAD	29..401	CDD:173847	116/377 (31%)
gcdhb	NP_001429839.1	None