DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and ivd

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_958899.1 Gene:ivd / 368775 ZFINID:ZDB-GENE-030616-262 Length:418 Species:Danio rerio


Alignment Length:401 Identity:158/401 - (39%)
Similarity:236/401 - (58%) Gaps:4/401 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QSVLTRSLCIARRS-LNARQIASL-SALSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQ- 63
            |.|:..|..::||. ..|..:..: :.|:|....|:::.:.|...:|:..|.:.|:::.:|:.: 
Zfish    12 QGVVKVSAGVSRRGCAGAVPVDDIVNGLTEEQIQLRQTVQRFFQEKLAPYADEIDKKNEFPQMRE 76

  Fly    64 -IRQMGELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDA 127
             .::||:||::.|..|.|.|||||.|:.:.|.||||||..|:.|:....:::|.:..::..||..
Zfish    77 FWKEMGDLGLLGVTAPVEFGGTGLGYLDHVIIMEEISRVSAAIGLSYGAHSNLCVNQMVRHGNQK 141

  Fly   128 QKKDYITPFTTGERVGCFALSEPGNGSDAGAASTIATDKGDHFVLNGTKAWITNAFEAEAAIVFA 192
            ||:.|:....|||.||..|:||..:|||..:....|..:|||:||||.|.||||..:|:..||:|
Zfish   142 QKEKYMPKLLTGEHVGALAMSESNSGSDVVSMKLTAKKQGDHYVLNGNKFWITNGSDADVLIVYA 206

  Fly   193 TTNKQLKHKGISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIA 257
            .|:.:...:||:||||.|...|||..:|.||||:||||||:|:||||.:|:||:||....|..:.
Zfish   207 KTDPEAVARGITAFIVEKGMPGFSSAQKLDKLGMRGSSTCELVFEDCKIPEENVLGPLNKGVYVL 271

  Fly   258 MQTLDAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARLLTW 322
            |..||..|:.:|...:||.||.|:.|:.|...|:|||:.|...|.:|.|:|||...:.|.|...:
Zfish   272 MSGLDLERLVLASGPVGIMQAVLDHAIPYLHVREAFGQKIGHFQLMQGKMADMYTRLSSCRQYLY 336

  Fly   323 RAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGT 387
            ..|...|:.....|:.|...|..:|.||..:...||.|||.||:.|....|..|||::.||..||
Zfish   337 NVARACDKGHFSAKDCAGVILYCAENATQVALDGIQCLGGNGYINDYPMGRFLRDAKLYEIGAGT 401

  Fly   388 SEIQRLVIAGS 398
            |||:|::|..|
Zfish   402 SEIRRIIIGRS 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 151/372 (41%)
ivdNP_958899.1 IVD 38..415 CDD:173845 152/375 (41%)

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