DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and CG17544

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_609961.2 Gene:CG17544 / 35213 FlyBaseID:FBgn0032775 Length:693 Species:Drosophila melanogaster


Alignment Length:402 Identity:91/402 - (22%)
Similarity:163/402 - (40%) Gaps:81/402 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LSALSETHQMLQ---KSCRDFANNELSGNAAK---FDREHLYPEKQIRQMGELGVMAVAIPEELG 82
            |..:.|..|.|:   |..|...|:.|..:.::   .|.:......|:.:|..|.:    :|:|: 
  Fly    32 LRLIFEKEQGLRIKYKVWRRLENDPLFAHPSRTLPMDEQKRLCAMQVNRMKHLDL----VPKEI- 91

  Fly    83 GTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLG----PLLSFGNDAQKKDYITPFTTGERVG 143
             ..|.:.|....:..|:...|.....:||..:|.:|    .:.:.|.:..:| ||......|.:.
  Fly    92 -ESLSFSAKTKYLMYINEALACYSPSLSVKIALGVGLFNNAIRAMGTEKHQK-YIEAAWNREVIT 154

  Fly   144 CFALSEPGNGSDAGAASTIAT--DKGDHFVLN-----GTKAWITNAFE-AEAAIVFA---TTNKQ 197
            |.|::|..:||:..:..|.||  .....||:|     ..|.|:.|..: |..|:.||   |.:.|
  Fly   155 CLAITELSHGSNTKSIRTTATYDPTTQEFVINTPDFEAAKCWVGNLGKTATVAMTFANLYTADGQ 219

  Fly   198 LKHKGISAFIVP-------KATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLG------- 248
              :.|:..|::|       .:..|..:|...:|.|:.|.....::|.:..:|::|:|.       
  Fly   220 --NHGLHGFLIPIRDPKTLLSYPGVLVGDIGEKCGLNGIDNGFVVFTNYRIPRDNLLNRTSDVTP 282

  Fly   249 ---------EPGFGFKIAMQTLDAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQ 304
                     |||.....|:::..||||||..::.....:|..:||.|:..|:.||.     :...
  Fly   283 EGVYESVFTEPGKVLGAALESFSAGRIGIMQESANTLCSAAVIAVRYSAVRKQFGP-----ERHG 342

  Fly   305 QKIADMSLAMESARLLTWRAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCIQIL-------GG 362
            :::|.:...:...|:.            ||...|.:.|:|..|..:    ..::|:       .|
  Fly   343 EEMAILEYQLHQYRIF------------PYLAAACVQKIATEELTS----TYMEIIARSQADSNG 391

  Fly   363 MGYVTDMAAERH 374
            ...:|..|||.|
  Fly   392 FDVLTQNAAEIH 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 90/397 (23%)
CG17544NP_609961.2 AXO 16..670 CDD:173839 91/402 (23%)

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