DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and Acad9

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_861433.2 Gene:Acad9 / 294973 RGDID:727973 Length:625 Species:Rattus norvegicus


Alignment Length:409 Identity:163/409 - (39%)
Similarity:228/409 - (55%) Gaps:37/409 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SLSALSETHQM---LQKSCRDFANNELSGNAAKFDREHLYPEKQIRQMGELGVMAVAIPEELGGT 84
            |...|||.:|.   |:|    |.|.|:  ::.|.|:|...|...:.::..||:..:.:|||.||.
  Rat    64 SQEELSEINQFVGPLEK----FFNEEV--DSRKIDQEGKIPADTLAKLKSLGLFGIQVPEEYGGL 122

  Fly    85 GLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQKKDYITPFTTGERVGCFALSE 149
            ||....||...|.||.. ||..|.::.:.::.|..::..||:.||..|:...::||.:..|.|:|
  Rat   123 GLSNTMYARLGEIISMD-ASITVTLAAHQAIGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTE 186

  Fly   150 PGNGSDAGAASTIATDKGD--HFVLNGTKAWITNAFEAEAAIVFATT-----NKQLKHKGISAFI 207
            |.:||||.:..|.||...|  :|||||:|.||||...|....|||.|     :..:|.| ::|||
  Rat   187 PASGSDAASIQTRATLSEDKKYFVLNGSKVWITNGGLANIFTVFAKTEVVDSDGSIKDK-MTAFI 250

  Fly   208 VPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTLDAGRIGIAGQA 272
            |.:...|.:.||.|||||||||:||::.||:..||.||:|||.|.|||:||..|::||..:....
  Rat   251 VERDFGGITNGKPEDKLGIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSAV 315

  Fly   273 LGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADM---SLAMESARLLTWRAAWLKDQK--Q 332
            .|:.:..:|...:||..|:.|.:.:::...||:|.|.|   :..|||...||   :.:.||.  .
  Rat   316 AGMLKKLIEQTAEYACTRKQFNRNLSEFGLIQEKFALMAQKAYVMESMAYLT---SGMLDQPGFP 377

  Fly   333 PYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVI-- 395
            ..:.||||.|:.:||||..|..:.:|||||.||:.|...||..|||||..|:|||:||.||.|  
  Rat   378 DCSIEAAMVKVFSSEAAWQCVSEALQILGGSGYMKDYPYERMLRDARILLIFEGTNEILRLFIAL 442

  Fly   396 -----AGSIL----KEYAS 405
                 ||.||    ||..|
  Rat   443 TGLQHAGRILTSRIKELKS 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 157/397 (40%)
Acad9NP_861433.2 VLCAD 42..449 CDD:173850 156/395 (39%)

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