DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and Acadvl

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_037023.1 Gene:Acadvl / 25363 RGDID:2014 Length:655 Species:Rattus norvegicus


Alignment Length:391 Identity:134/391 - (34%)
Similarity:205/391 - (52%) Gaps:28/391 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SALSETHQMLQKSCRDFANNELSGNAAKFDREHLYPEKQ----------IRQMGELGVMAVAIPE 79
            |.|:|......|        ||.|..|:|..|...|.|.          ::.:.|||...:.:|.
  Rat    92 SVLNEGQTQFLK--------ELVGPVARFFEEVNDPAKNDSLEKVEEDTLQGLKELGAFGLQVPS 148

  Fly    80 ELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNNSLYLGPLLSFGNDAQKKDYITPFTTGERVGC 144
            ||||.||....||...|.:........|.:..:.|:....:|.:|..|||:.|:....:|:.:..
  Rat   149 ELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAA 213

  Fly   145 FALSEPGNGSDAGA--ASTIATDKGDHFVLNGTKAWITNAFEAEAAIVFATT------NKQLKHK 201
            |.|:||.:|||..:  :|.:.:..|.::.|||:|.||:|...|:...|||.|      ...:|.|
  Rat   214 FCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEK 278

  Fly   202 GISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPGFGFKIAMQTLDAGRI 266
             |:||:|.::..|.:.|..|.|:||:.|:|.::.|:...||.||:|||.|.|||:|:..|:.||.
  Rat   279 -ITAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPAENVLGEVGDGFKVAVNILNNGRF 342

  Fly   267 GIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMESARLLTWRAAWLKDQK 331
            |:|....|..:|.:..|||:|..|..||..|.....||:|:|.|::.......:.:..:...||.
  Rat   343 GMAATLAGTMKAIIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQG 407

  Fly   332 -QPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVI 395
             :.:..|||::|:..||||...:.:||||:||||::.:...||..||.||..|:|||::|.||.:
  Rat   408 FKDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDIRIFRIFEGTNDILRLFV 472

  Fly   396 A 396
            |
  Rat   473 A 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 132/387 (34%)
AcadvlNP_037023.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..70
Catalytic. /evidence=ECO:0000250|UniProtKB:P49748 41..482 134/391 (34%)
VLCAD 72..481 CDD:173850 134/391 (34%)
Membrane-anchoring. /evidence=ECO:0000250|UniProtKB:P49748 483..516
Blue background indicates that the domain is not in the aligned region.

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