DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arc42 and Acox2

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_665713.2 Gene:Acox2 / 252898 RGDID:628684 Length:681 Species:Rattus norvegicus


Alignment Length:436 Identity:97/436 - (22%)
Similarity:147/436 - (33%) Gaps:140/436 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 REHLYPEKQIRQMGELGVMAVAI------PEELGGTGLDYVAYAIAMEEISRGCASAGVIMSVNN 113
            ||.|| |..|::...|..:|.::      ||.:         ||   ..:..|        :||.
  Rat    73 REELY-EDAIQKRFHLEKLAWSLGWSEDGPERI---------YA---NRVLDG--------NVNL 116

  Fly   114 SLY---LGPLLSFGNDAQKKDYITPFTTGERVGCFALSEPGNGSDAGAASTIAT--DKGDHFVLN 173
            ||:   :..:.|.|:|.|...:.......:.:..:|.:|.|:|:......|.||  :....||::
  Rat   117 SLHGVAMNAIRSLGSDEQIAKWGQLCKNFQIITTYAQTELGHGTYLQGLETEATYDEARQEFVIH 181

  Fly   174 -----GTKAW-------ITNAFEAEAAIVFATTNKQLKHKGISAFIVP-------KATKGFSLGK 219
                 .||.|       :|:     |.::...|...::| |:.|||||       ....|.::|.
  Rat   182 SPTMTSTKWWPGDLGWSVTH-----AVVLAQLTCLGVRH-GMHAFIVPIRSLEDHTPLPGITVGD 240

  Fly   220 KEDKLGIRGSSTCQLIFEDCVVPKENM---------------LGEPGFGFKIAMQTLDAGRIGIA 269
            ...|:|:.......|......||:|||               ||.|        |:...|.:...
  Rat   241 IGPKMGLEHIDNGFLQLNHVRVPRENMLSRFAEVLPDGTYQRLGTP--------QSNYLGMLVTR 297

  Fly   270 GQALGIG-----QAALELAVDYA----QKRQAFGKPIAKL---QSIQQKI--------------- 307
            .|.|..|     |.|..:|..|:    |.|.....|.||:   |:.|||:               
  Rat   298 VQLLCKGILPSLQKACIIATRYSVIRHQSRLRPSDPEAKILEYQTQQQKLLPQLAVSYAFHFTAT 362

  Fly   308 ---------------ADMSLAMESARLLTWRAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCI 357
                           .|.||..|...|.|...|...|              ..::.|.:|...| 
  Rat   363 SLSEFFHSSYSAILKRDFSLLPELHALSTGMKATFAD--------------FCAQGAEICRRAC- 412

  Fly   358 QILGGMGYVTDMAAERHYRDARITEIYEGTSEIQRLVIAGSILKEY 403
               ||.||............|..:..|||.:.:..|.:|..::|.|
  Rat   413 ---GGHGYSKLSGLPTLVARATASCTYEGENTVLYLQVARFLMKSY 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 95/432 (22%)
Acox2NP_665713.2 AXO 20..655 CDD:173839 97/436 (22%)
Microbody targeting signal. /evidence=ECO:0000255 679..681
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.