DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arc42 and acdh-10

DIOPT Version :10

Sequence 1:NP_650840.1 Gene:Arc42 / 42364 FlyBaseID:FBgn0038742 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001294824.1 Gene:acdh-10 / 24104866 WormBaseID:WBGene00020366 Length:417 Species:Caenorhabditis elegans


Alignment Length:413 Identity:156/413 - (37%)
Similarity:237/413 - (57%) Gaps:13/413 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQSVLTRSLCIARR-----SLNARQIASLSALSETHQMLQKSCRDFANNELSGNAAKFDREHLYP 60
            :..:.|.||.::|.     :..:|||:  ..||||.:.:|.:...|:.:.|..||||||....:|
 Worm     2 LSRIATSSLGLSRSATGVIATQSRQIS--FDLSETQKEIQDAALKFSKDVLVPNAAKFDESGEFP 64

  Fly    61 EKQIRQMGELGVMAVAIPEELGGTGLDYVAYAIAMEEISRGCASAGVIMSV-NNSLYLGPLLSFG 124
            .:.:||...||:|...|||:.||.|:..:..|:.:|.:|.||  .|:.:.: ..||.:.|:...|
 Worm    65 WEIVRQAHSLGLMNPQIPEKYGGPGMTTLETALIVEALSYGC--TGIQLGIMGPSLAIAPVYISG 127

  Fly   125 NDAQKKDYITPFTTGERVGCFALSEPGNGSDAGAASTIATDKGDHFVLNGTKAWITNAFEAEAAI 189
            |:.|||.|:........:..:.::|||.|||.....|....|||.:::||:|||||....|:...
 Worm   128 NEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFF 192

  Fly   190 VFATTNKQLK---HKGISAFIVPKATKGFSLGKKEDKLGIRGSSTCQLIFEDCVVPKENMLGEPG 251
            |.|.::...|   .|..:||||...|.|.:.||||..:|.|.|.|..:.|||..||.||:||.||
 Worm   193 VLARSDPNPKTPAGKAFTAFIVDGDTPGITRGKKEKNMGQRCSDTRVITFEDVRVPAENVLGAPG 257

  Fly   252 FGFKIAMQTLDAGRIGIAGQALGIGQAALELAVDYAQKRQAFGKPIAKLQSIQQKIADMSLAMES 316
            .|||:||:..|..|.|:|..|||:....|:.:..||.:|:|||..||..|::|..:|||::.:|.
 Worm   258 AGFKVAMEAFDMTRPGVAAGALGLSWRCLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLEL 322

  Fly   317 ARLLTWRAAWLKDQKQPYTKEAAMAKLAASEAATLCSHQCIQILGGMGYVTDMAAERHYRDARIT 381
            |||:|:::|...|.|...:..|::||..|::.|...:...:||.||.|:.::...|:..|||:|.
 Worm   323 ARLITYKSANDVDNKVRSSYNASIAKCFAADTANQAATNAVQIFGGNGFNSEYPVEKLMRDAKIY 387

  Fly   382 EIYEGTSEIQRLVIAGSILKEYA 404
            :||||||:|||:||:..:|..:|
 Worm   388 QIYEGTSQIQRIVISRMLLGHFA 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arc42NP_650840.1 SCAD_SBCAD 29..401 CDD:173847 145/375 (39%)
acdh-10NP_001294824.1 MCAD 31..408 CDD:173846 148/378 (39%)

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