DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4562 and ABCG43

DIOPT Version :9

Sequence 1:NP_001262747.1 Gene:CG4562 / 42362 FlyBaseID:FBgn0038740 Length:1408 Species:Drosophila melanogaster
Sequence 2:NP_680694.3 Gene:ABCG43 / 827189 AraportID:AT4G15236 Length:1390 Species:Arabidopsis thaliana


Alignment Length:1122 Identity:223/1122 - (19%)
Similarity:390/1122 - (34%) Gaps:358/1122 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 EAEHSIVISK-LKAKWD-------------QKNTDNTLDNISLKFKPRQLVAVIGPVGSGKSSLI 488
            |||..:|..| :...|:             |::..:.|..:|...:|:::..::||.|.||::|:
plant   117 EAECEVVHGKPIPTLWNAIASKLSRFTFSKQEDKISILKGVSGIIRPKRMTLLLGPPGCGKTTLL 181

  Fly   489 QAVLGELNPD---SGSVKVNG----------TLSYASQE----PWLFTGTVRQNILFG------- 529
            .|:.|.|:|.   .|.|..||          |.||.||.    |.|   :||:.:.|.       
plant   182 LALSGRLDPSLKTRGEVSYNGHLFSEFVPEKTSSYVSQNDLHIPEL---SVRETLDFSGCFQGAG 243

  Fly   530 --LPMDK-----HRYRTVV----------------KRCALERDFEL----LPYADKTIVGERG-A 566
              |.|.|     .:.:.:|                .:..|:.|:.|    |.....|.||:.. .
plant   244 SRLEMMKEISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRP 308

  Fly   567 SLSGGQKARISLARAVYRKADIYLLDDPLSAVDTHVGRHLFDQCMRGFLREE----IVLLVTHQL 627
            .:|||||.|::....:........:|:..:.:|:.....:. .|::.|.|..    :|.|:....
plant   309 GISGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTTFQIL-SCLQQFARLSEGTILVSLLQPAP 372

  Fly   628 QFLEQADVIVIMDKGKISAMGTYESMA-------------KSGLDFAQMLTDPSKKDEGAGDAPD 679
            :..|..|.:::|.:|||...|..:.:.             ||..:|.|.:.  |:||:       
plant   373 ETFELFDDLILMGEGKIIYHGPRDFICSFFEDCGFKCPQRKSVAEFLQEVI--SRKDQ------- 428

  Fly   680 KKSLSRQNSKLRDRHGSISSMESAAESL-AAESPMQTQEGRVEGRIGMKLYKKYFGANGY--GLF 741
                 .|....||:.....|::|..|.. .::..:|.|:         :|.|.|..:...  || 
plant   429 -----EQYWCHRDKPYCYVSIDSFIEKFKKSDLGLQLQD---------ELSKTYDKSQTQKDGL- 478

  Fly   742 IVFAFFCIGAQVLASGGDIFLSYWVNKNGEAERDTFMARLRRAFPETRINADTDPVDIYYFTGIN 806
                  ||        ....||.|         |.|.|..||.|...:.|:     .:|.|    
plant   479 ------CI--------RKYSLSNW---------DMFKACSRREFLLMKRNS-----FVYVF---- 511

  Fly   807 VSVIIFSLVRSMLFFYLAMRSSTTLHNTMFQGVTRAAMHFFNTNPSGRILNRFSKDLGQVDEILP 871
                     :|.|..::...:.|....|   |.||.::|          .|..   ||.:...|.
plant   512 ---------KSGLLIFIGSIAMTVYLRT---GSTRDSLH----------ANYL---LGSLFFSLI 551

  Fly   872 SVMMDVMQIFLAIVGIVVVLCIINVWYILATVFLVIVFYLLRVFYLSTSRDVKRLEAVTRSPIYS 936
            .::.|.:......|..:.|.|.....|          ||....:.:.:        |:.:.|| |
plant   552 KLLADGLPELTLTVSRIAVFCKQKELY----------FYPAWAYAIPS--------AILKIPI-S 597

  Fly   937 HLSASLNGLATIRAFGAQKE----------LIAEFDNYQDMHSSGYYMFLATSRAFGYWLDCVCV 991
            .|.:.|..:.|....|...|          |.|       :|.|...||.|....|..:.....:
plant   598 FLESFLWTMLTYYVIGYSPEAGRFIRQVLILFA-------LHLSCISMFRAIGAVFRDFDVATTI 655

  Fly   992 VYIAVITLSFFLFSPENGGDVGLAITQAMGMTGMVQWGMRQS----AELENT-----------MT 1041
            ..|:::.||.|      ||    .|.:...|...::||...|    ||:..|           ||
plant   656 GSISIVLLSVF------GG----FIVRKPSMPSWLEWGFWLSPLSYAEIGLTSNEFFAPMWRKMT 710

  Fly  1042 AVERVVEYEDLEPEG-DFESK-------------------------------------PNKKPPK 1068
            :..|.:..:.|:..| :|.::                                     .:.|..:
plant   711 SENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHDKNTQ 775

  Fly  1069 DWPEDGKIV--------FDDLS-----LKYFPDKAADYVLRSLNIAIEGCEKVGI----VGRTGA 1116
            ...:|.||.        |:.|:     ::||.:......|:.|: .:.|..|.|:    :|.:||
plant   776 SSEKDSKIASHSKNALPFEPLTFTFQDVQYFIETPQGKKLQLLS-DVTGAFKPGVLTALMGVSGA 839

  Fly  1117 GKSSLINALFRLSYNEGAILIDRRDTNDL----------GLHDLRSKIS------------IIPQ 1159
            ||::|::           :|..|:...|:          .:.|..|::|            :..|
plant   840 GKTTLLD-----------VLSGRKTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQ 893

  Fly  1160 EPVLFSGTMRYNLDPFDEYSDAKLWESLEEVKLKQVVADLPS--GLQSKISEGGTNFSVGQRQLV 1222
            |.:.:|..:|...:...|...|.:.|.||.::|:::...|..  |:....:|        ||:.:
plant   894 ESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVPGISGVTAE--------QRKRL 950

  Fly  1223 CLARAILRENRILVMDEATANVDPQTDALIQTTIRN-----KFKDCTVLTIAHRLHTVMDSDKVL 1282
            .:|..::....|:.|||.|..:|.:..|::...::|     :...||:...:..:....| :.:|
plant   951 TIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFD-ELIL 1014

  Fly  1283 VMDAGKAVEFGSPFELLTTSEKKVFHSMVKQTGDSTFDALLKVAQKVGLRFKIQCNLSTCLSSLS 1347
            :.:.||.:.:|.    |.....||....:...|..              :.|...|.:|.:..::
plant  1015 MKNGGKIIYYGP----LGQHSSKVIEYFMSIPGVP--------------KLKENSNPATWILDIT 1061

  Fly  1348 SFQAHDDNLRLKKDSXH 1364
            |..:.|   :|..|. |
plant  1062 SKSSED---KLGVDLAH 1075

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4562NP_001262747.1 CFTR_protein 12..1300 CDD:273530 211/1056 (20%)
ABC_membrane 98..367 CDD:294371
ABCC_MRP_domain1 443..643 CDD:213217 58/269 (22%)
ABC_membrane 799..1027 CDD:294371 46/237 (19%)
ABCC_MRP_domain2 1074..1295 CDD:213211 54/266 (20%)
ABCG43NP_680694.3 AAA 13..1390 CDD:333001 223/1122 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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