DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4562 and ABCA3

DIOPT Version :9

Sequence 1:NP_001262747.1 Gene:CG4562 / 42362 FlyBaseID:FBgn0038740 Length:1408 Species:Drosophila melanogaster
Sequence 2:NP_190358.3 Gene:ABCA3 / 823928 AraportID:AT3G47740 Length:932 Species:Arabidopsis thaliana


Alignment Length:910 Identity:175/910 - (19%)
Similarity:318/910 - (34%) Gaps:261/910 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 ISLARAVYRKADIYLLDD--------PLSAVDTHVGRHLFDQCMRGFLREEIVLLVTHQLQFLEQ 632
            |.:.|..||..|....:|        |::.:.|.....|.....|..||....         :..
plant   106 ILIPRPEYRALDANFTNDSCRRKNSCPVTILFTGNNHSLGAVLSRNLLRRPFA---------MNS 161

  Fly   633 ADVIVIMDKGKISAMGTYESMAKSGLDFAQMLTDPSKKDEGAGDAPDKKSLSRQNSKLRDRHGSI 697
            :|::..:....::.  |::..|.:.||              ||...|....:.|.....:.:.||
plant   162 SDLLFSLANNVLAT--TFKGSATNYLD--------------AGIVSDGSIYNIQPRCPPNSNFSI 210

  Fly   698 SSMESAAESLAAESPMQ-TQEGR-VEG---------RIGMKLYKKYFGANGYGLF--IVFAFFCI 749
            |         ..:||:. |::.| |:|         .:.::|::.|...|..|:.  ||.|:   
plant   211 S---------IGQSPLNFTKDMRCVQGLNLWRNNSIEVNLELFEGYHKGNSDGMINEIVAAY--- 263

  Fly   750 GAQVLASGGDIF--------LSYWVNK--NGEAERDTFMA---------------------RLRR 783
                     |:|        ::.|.|.  ..||....:..                     |.:.
plant   264 ---------DLFDTNMTNFNVNIWFNATYKDEARNQPYKVVRVPRLVNWVSNAYLQYLQGPRTKM 319

  Fly   784 AF--------PETRINADTDPVDIYYFTGINVSVIIFSLVRSMLF-FYLAMRSSTTLHNTMFQGV 839
            .|        |||::..|                 |.||:..:.| :.:.:.....|::.:::..
plant   320 LFEFVKEMPKPETKLRLD-----------------IASLIGPIFFTWVILLLLPVILNSLVYEKQ 367

  Fly   840 TR----AAMHFFNTNPSGRILNRFSKDLGQVDEILPSVMMDVMQIFLAIVGIVVVL--CIINVWY 898
            .|    ..||.....|...|...:...|.           ....|||.|.|.|:.|  .::|.:.
plant   368 QRLRIIMKMHGLGDGPYWIISYAYFLALS-----------TFYIIFLMIFGSVIGLKFFLLNDFS 421

  Fly   899 ILATVFLVIVFYLLRVFYLSTSRDVKRLEAVTRSPIYSHLSA---------SLNGLATIRAFGAQ 954
            :..:.:.|.:...:.:.:|.:|...|...|...:.:|...|.         .|.||:..|.:...
plant   422 LQFSFYFVYINLQISIAFLLSSAFSKVETASVAAYLYVFGSGLLGMFLFQFLLEGLSFPRRWIFV 486

  Fly   955 KELIAEFDNYQDMH--SSGYYMFLATSRAFGYW-------LDCVCVV-----YIAVITLSFFLFS 1005
            .||...|..|:.::  |...|......:....|       :|.|..:     ::|:|...:....
plant   487 MELYPGFSLYRGLYEFSQNAYQGNLNGKDGMKWKYFSDNAIDEVFYIIIVEWFVALIATYYIDKM 551

  Fly  1006 PENGGDVGLAITQAMGMTGMVQWGMRQSAELENTMTAVERVVEYEDLEPEGD------FESKPNK 1064
            ..:|.|:...:..        |...:.|..|:..::|:...:|..|:..|.:      .||..:.
plant   552 SSSGKDLLFFLKN--------QNPFKISHSLQKQVSAISVEMEKLDVIHESEKVAQLMLESSTSH 608

  Fly  1065 KPPKDWPEDGKIVFDDLSLKYFPDKAAD---YVLRSLNIAIEGCEKVGIVGRTGAGKSSLINALF 1126
                      .||.|.|. |.:|.:..:   ..:|.|::|:...|..|::|..||||:|.||.:.
plant   609 ----------AIVCDKLR-KVYPGRDGNPPKKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMT 662

  Fly  1127 RL-SYNEGAILIDRRDT--------NDLGL---HDLRSKISIIPQEPVLFSGTMRYNLDPFDEYS 1179
            .| ....||..:...|.        ..:|:   |||..: ::..:|.:||.|.:: ||...|  .
plant   663 GLVKPTSGAAFVQGLDICKDMDRVYTSMGVCPQHDLLWE-TLTGREHLLFYGRLK-NLKGVD--L 723

  Fly  1180 DAKLWESLEEVKL-KQVVADLPSGLQSKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATAN 1243
            :..:.|||..|.| ...|||.|:|          .:|.|.::.:.:|.:::...:::.|||.:..
plant   724 NQAVEESLRSVNLFHGGVADKPAG----------KYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 778

  Fly  1244 VDPQTDALIQTTIRNKFKDCTVLTIAHRLHTV-MDSDKVLVMDAGKAVEFGSPFEL--------- 1298
            :||.:...:.|.|:|..:...::...|.:... ...|::.:...|:....|:|.||         
plant   779 LDPASRKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYV 843

  Fly  1299 --LTTSE-----------------KKVFHSMVKQTGDSTFD---------ALLKVAQKVGLRFKI 1335
              :|||.                 ||::|.    .|...|:         .:.:|.:|....||:
plant   844 LTMTTSSEHEKDVEMLVQEVSPNVKKIYHI----AGTQKFEIPKDEVRISEVFQVVEKAKSNFKV 904

  Fly  1336  1335
            plant   905  904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4562NP_001262747.1 CFTR_protein 12..1300 CDD:273530 163/847 (19%)
ABC_membrane 98..367 CDD:294371
ABCC_MRP_domain1 443..643 CDD:213217 13/74 (18%)
ABC_membrane 799..1027 CDD:294371 43/257 (17%)
ABCC_MRP_domain2 1074..1295 CDD:213211 59/237 (25%)
ABCA3NP_190358.3 ABC2_membrane_3 <360..511 CDD:289468 31/161 (19%)
CcmA 609..892 CDD:224054 70/301 (23%)
ABC_subfamily_A 614..835 CDD:213230 58/235 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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