DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4562 and Abcb10

DIOPT Version :9

Sequence 1:NP_001262747.1 Gene:CG4562 / 42362 FlyBaseID:FBgn0038740 Length:1408 Species:Drosophila melanogaster
Sequence 2:NP_062425.1 Gene:Abcb10 / 56199 MGIID:1860508 Length:715 Species:Mus musculus


Alignment Length:551 Identity:143/551 - (25%)
Similarity:241/551 - (43%) Gaps:75/551 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   797 VDIYYFT---GINVSVIIFSLVRSMLFF----------YLAMRSSTTLHN----TMFQGVTRAAM 844
            :|:.|..   |...|:.....|.:.:|.          ||...|..::.|    ::|..:.|..:
Mouse   161 IDVIYTNPSEGYGDSLTRLCAVLTCVFLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEV 225

  Fly   845 HFFNTNPSGRILNRFSKDLGQVDEILPSVMMDVMQI-FLAIVGIVVVLCIINVWYILATVFLVIV 908
            .||:...:|.::||.|.|...:...:...:.|.::. ..|.||:.::..:..   .|||..|.:|
Mouse   226 AFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSP---SLATFVLSVV 287

  Fly   909 --FYLLRVFYLSTSRDVKRLEAVTRSPIYSHLSAS---LNGLATIRAFG---------------- 952
              ..:|.|.|   .|.:::|...|:..:......:   :..:.||||||                
Mouse   288 PPISVLAVIY---GRYLRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTGRVDQL 349

  Fly   953 ---AQKELIAEFDNYQDMHSSGYYMFLATSRAFGYWLDCVCVVYIAVITLSFFLFSPENGGDVGL 1014
               ||||.:|....:.....||..:.|:.....|..:..   .::.|..||.||.   ....|||
Mouse   350 LQLAQKEALARAGFFGAAGLSGNLIVLSVLYKGGLLMGS---AHMTVGELSSFLM---YAFWVGL 408

  Fly  1015 AITQAMGMTGMVQWGMRQSAELENTMTAVERVVEYEDLEPEGDFESKPNKKPPKDWPE-DGKIVF 1078
            :|.   |::...       :||...:.|..|:.|..:.:|...|    |:....|... .|.:.|
Mouse   409 SIG---GLSSFY-------SELMKGLGAGGRLWELLERQPRLPF----NEGMVLDEKTFQGALEF 459

  Fly  1079 DDLSLKYFPDKAADYVLRSLNIAIEGCEKVGIVGRTGAGKSSLINALFRL-SYNEGAILIDRRDT 1142
            .::...| |.:....|.:..:::|.......:||.:|:|||::::.|.|| ..|.|.:.:|..|.
Mouse   460 RNVHFTY-PARPEVSVFQDFSLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDI 523

  Fly  1143 NDLGLHDLRSKISIIPQEPVLFS----GTMRYNLDPFDEYSDAKLWESLEEVKLKQVVADLPSGL 1203
            ..|....|||||..:.|||||||    ..:.|..|.....:..::..:.|.....:.:...|.|.
Mouse   524 RQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGF 588

  Fly  1204 QSKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDALIQTTIRNKFKDCTVLTI 1268
            .:.:.|.|...|.||:|.:.:|||:|:..:||::||||:.:|.:.:.|:|..:....:..|||.|
Mouse   589 DTVVGEKGILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLII 653

  Fly  1269 AHRLHTVMDSDKVLVMDAGKAVEFGSPFELL 1299
            ||||.|:.:::.|.|:|.||..|.|:..|||
Mouse   654 AHRLSTIKNANFVAVLDHGKICEHGTHEELL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4562NP_001262747.1 CFTR_protein 12..1300 CDD:273530 143/551 (26%)
ABC_membrane 98..367 CDD:294371
ABCC_MRP_domain1 443..643 CDD:213217
ABC_membrane 799..1027 CDD:294371 58/269 (22%)
ABCC_MRP_domain2 1074..1295 CDD:213211 72/225 (32%)
Abcb10NP_062425.1 3a01208 8..694 CDD:273363 143/551 (26%)
ABC_membrane 142..403 CDD:279056 54/253 (21%)
ABC_MTABC3_MDL1_MDL2 458..698 CDD:213216 74/228 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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