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Protein Alignment CG4562 and haf-2

DIOPT Version :9

Sequence 1:	NP_001262747.1	Gene:	CG4562 / 42362	FlyBaseID:	FBgn0038740	Length:	1408	Species:	Drosophila melanogaster
Sequence 2:	NP_495537.2	Gene:	haf-2 / 174204	WormBaseID:	WBGene00001812	Length:	773	Species:	Caenorhabditis elegans

Alignment Length:	716	Identity:	163/716 - (22%)
Similarity:	324/716 - (45%)	Gaps:	127/716 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   642 GKISAMGTYESMAKSGLDFAQMLTDPSKKDEGAGDAPDKKSLSRQNSKLRDRHGSISSMESAAES 706
            |.|..:..|.....:..|:.::|...:   |.||.:..:.:.    ..:||.. :.|::||.: |
Worm   131 GFIQVLVWYFVFTSNPFDYHRLLNTTA---ENAGTSVTETAA----ETVRDTE-TASNVESGS-S 186

  Fly   707 LAAESPMQTQEGRVEGRIGMKLYKKYFG------ANGYGLFIVFAFFCI-----GAQVLASGGDI 760
            .|..:|:.        ::.::|. .|.|      |:|:....|:|...:     .|||::   ||
Worm   187 TAPRAPLH--------KVLLRLL-SYCGHQWPWFASGFVFLTVYALARVFIPNYTAQVIS---DI 239

  Fly   761 FLSYWVNKNGEAERDTFMARLRRAFPETRINADTDPVDIYYFTGINVSVIIFSLVRSMLFFYLAM 825
                 |||.|      ..|.:.               .|...|.:..:..:|..:|...|.|...
Worm   240 -----VNKRG------IQALIH---------------SIIVLTCLTATSSLFGGLRGGCFDYATA 278

  Fly   826 RSSTTLHNTMFQGVTRAAMHFFNTNPSGRILNRFSKDLGQVDEILPSVMMDVMQIFLAIVGIVVV 890
            ..:..:...:|..:.|..:.|::|..:|..::|.:.|...:...:.:.:...|:..:.::|.:..
Worm   279 LVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRLTSDCQTISSTVSTNVNVFMRNGVMLIGALAF 343

  Fly   891 LCIINVWYILATVFLVI--VFYLLRV---FYLSTSRDVKRLEAVTRSPIYSHLSASLNGLATIRA 950
            :.::: |.:....|:.:  |.::.:.   ||...|..:::..|.|.......:|.    :.|:|:
Worm   344 MILMS-WRLAMVTFIAVPLVGFITKAYSSFYDKISEKLQQTIAETNQMAEEVVST----MRTVRS 403

  Fly   951 FGAQKELIAEFDNYQDMHSSGY---------YMFLATSRAFGYWLDCVCVVYIAVITLSFFLFSP 1006
            |..:|:   |...::|..||..         |:|...:..|     |...:.:||:   |:
Worm   404 FACEKK---ELKRFEDRLSSTLSVNRKKSIAYLFYTWNNEF-----CDNAILVAVL---FY---- 453

  Fly  1007 ENGGDVGLAITQAMGMTGMVQWGMRQ----------SAELENTMTAV---ERVVEYEDLEPEGDF 1058
              ||.  |.:|..|....::.:.:.|          |..:...|.||   .:|.:..:.:|:  |
Worm   454 --GGH--LVMTGKMEKEQLITFLLYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMNRKPQ--F 512

  Fly  1059 ESKPNKKPPKDWPEDGKIVFDDLSLKYFPDKAADYVLRSLNIAIEGCEKVGIVGRTGAGKSSLIN 1123
            |....::|    ..:|.|.|..:...| |.:..:.||:.|.::|:..|.|.:||.:|.||||::
Worm   513 ELDGMQRP----FVNGNITFSHVGFTY-PSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIV- 571

  Fly  1124 ALFRLSY--NEGAILIDR---RDTNDLGLHDLRSKISIIPQEPVLFSGTMRYN-LDPFDEYSDAK 1182
            :|....|  :||::.:|.   :|.|.:..|   .|::::.|||||::|::|:| |...|..::..
Worm   572 SLIEHFYEPDEGSVTLDGVPIKDINHVYYH---QKVALVAQEPVLYNGSVRHNILYGCDFATEDD 633

  Fly  1183 LWESLEEVKLKQVVADLPSGLQSKISEGGTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQ 1247
            :..:.:...:...|.:|..|..:...|.|...|.||:|.:.:|||::|...:|::||||:.:|.:
Worm   634 MLNASKMANVHDFVMELEKGYDTNCGEKGVQMSGGQKQRIAIARALVRNPAVLILDEATSALDTE 698

  Fly  1248 TDALIQTTIRNKFKDCTVLTIAHRLHTVMDSDKVLVMDAGKAVEFGSPFELLTTSEKKVFHSMVK 1312
            ::||:|..:....::.||:.:||||.|:..::|:.|:..|..|:.|:..||:|.:: .:::|:|.
Worm   699 SEALVQQALSRCAQERTVIIVAHRLSTIEKANKIAVIVKGCLVQMGTHTELMTDTD-GMYYSLVS 762

  Fly  1313 Q 1313
            :
Worm   763 R 763

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.