DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4562 and abcc6

DIOPT Version :9

Sequence 1:NP_001262747.1 Gene:CG4562 / 42362 FlyBaseID:FBgn0038740 Length:1408 Species:Drosophila melanogaster
Sequence 2:XP_002932264.3 Gene:abcc6 / 100493037 XenbaseID:XB-GENE-6465366 Length:1500 Species:Xenopus tropicalis


Alignment Length:1379 Identity:467/1379 - (33%)
Similarity:740/1379 - (53%) Gaps:169/1379 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PREKSNIFSSLMFCFAMPTFFKGRKKTLDENDLYRALQEHRSDHLGSKLSAAWEKEVEK----KR 73
            |..:|:..|.:.|.:.....|:|.|:.|...|::...:...::.:.:..|...|||.:|    |.
 Frog   207 PVSESSFLSKVTFSWFTEIMFRGYKQPLKAEDVWSLRKSDTAEEILTLFSKGVEKECKKANLLKE 271

  Fly    74 KKKKTPS-------------------------------LLKASMNVFGWRLAGLGLVLFILEIGF 107
            ..:.:||                               |||..|..||.... |..:|......|
 Frog   272 PTRFSPSTLDNDMWISQTEKSEIELLLKNQHIQLSQKTLLKVIMRSFGLYFL-LSALLMTFYTAF 335

  Fly   108 RVTQPLFLGGLVAYYADASNQEGDNQTKAYLYALGVILTSACNVLFMHPYMLGMFHIGMKARIAM 172
            ....||.:..|:....|.|..    ..:.:|.|:.:.:...|..||:|.:....:.|||:.|.|:
 Frog   336 LFISPLLVRLLLQLLKDPSAP----SWQGFLVAVFLFICPCCQSLFLHQHDYICYVIGMRLRAAI 396

  Fly   173 TSMIYRKALRLSRTALGDTTIGQVVNLISNDVGRLDVSVIHMNYLWLGPVEIGIITYLMYREIGI 237
            ...:|:|||.:|.....:::.|::|||||.||.:|......:||:|..||.|.:..|.:::.:||
 Frog   397 VGTVYKKALMISSAGRKESSAGEIVNLISTDVQKLMDLATCVNYMWSAPVTIIVAMYFLWQTLGI 461

  Fly   238 SAFFGVAVMLLFIPLQ---AYLGKKTSVLRLKTALRTDERVRMMNEIISGIQVIKMYAWEIPFSK 299
            :...||||.:|.:|..   |.:.|:....::|   :.|.|:::::||:.||:|:|:||||..|.|
 Frog   462 AVLAGVAVFILNLPFMTVFAVIIKRVQEQQMK---QKDGRIKIISEILQGIKVLKLYAWENAFMK 523

  Fly   300 MINYVRTKEMNAIR-NVNYIRGTLQSFI-----MFVTRISVFVSLVGFVLLGKLLTAEKAFVITA 358
            .:...|..|:.|:: ....:.|.|..|:     :.:|...||::|..    ..:|.||||||...
 Frog   524 KVTEFRLMELKAVKTGALLLSGALAVFVASPFWVSLTMFGVFLALDE----KNILDAEKAFVTII 584

  Fly   359 YYNILRNTMTVYFPMGISQFAELLVSIRRIQTFMLHEETKVRDKSEDLDEQKLGKAGLIAEPTVA 423
            ..||||..:.: |||.|:.||:..||::|:..|...||  :..:|.|:::               
 Frog   585 LLNILRIPLRM-FPMAITLFAQSSVSLKRMVKFFSAEE--LEPESVDIND--------------- 631

  Fly   424 QTTGVLKPSSRRTSEAEHSIVISKLKAKWDQKNTDNTLDNISLKFKPRQLVAVIGPVGSGKSSLI 488
                         |.::|:|.|......|...... .|.:|::......||||:|.||.||:||:
 Frog   632 -------------SLSKHAITIRHGTFTWSSSEPP-CLQSINIGIPQGTLVAVVGQVGCGKTSLL 682

  Fly   489 QAVLGELNPDSGSVKVNGTLSYASQEPWLFTGTVRQNILFGLPMDKHRYRTVVKRCALERDFELL 553
            .|:|||:....|.|.:..:::|..|:.|:...|.::|:|||..|:|..|..||:.|||..|.::|
 Frog   683 SALLGEMEKVEGQVSLMSSVAYVPQQTWIPNATFKENVLFGRKMEKCWYDQVVQACALLPDLKIL 747

  Fly   554 PYADKTIVGERGASLSGGQKARISLARAVYRKADIYLLDDPLSAVDTHVGRHLFDQCM--RGFLR 616
            ...:.|.:||:|.:||||||.|||:||||||..|:|||||||||||.|||:|||:|.:  .|.|:
 Frog   748 SGGENTEIGEKGVNLSGGQKQRISIARAVYRNCDVYLLDDPLSAVDAHVGQHLFEQVIGPSGLLK 812

  Fly   617 EEIVLLVTHQLQFLEQADVIVIMDKGKISAMGTYESMAKSGLDFAQMLTDPSKKDEGAGDAPDKK 681
            ::..:||||.:.||.|.|:|::|..|::|.:|||..:.:....|::.|...::|.....::.:::
 Frog   813 DKTRVLVTHGVSFLPQMDMIIVMSDGRVSEVGTYNELLQKNGAFSEFLNTYARKSVVFEESYEEQ 877

  Fly   682 SLSRQNS-----KLRDRHGSISSMESAAESLAAESPMQTQEGR-------VEGRIGMKLYKKYFG 734
            :   .||     |::.:|.:.:..::..:.:|.|  ::...|:       :.||:.:.:|.:|..
 Frog   878 T---PNSIQGAMKMKGKHSARNDTDNETDDVANE--IEADAGKLTEADVALTGRVKLSVYLEYCK 937

  Fly   735 ANGYGLFIVFAFFCIGAQVLASGGDIFLSYWVNKNGEAERDTFMARLRRAFPETRINADTDPVD- 798
            ..|....::.|.|.|..|    ...:..:||:.                      :.||..||: 
 Frog   938 IMGKWYLLISALFFIVQQ----AASLSYNYWIG----------------------LWADDPPVNG 976

  Fly   799 ----------IYYFTGINVSVIIFSLVRSMLFFYLAMRSSTTLHNTMFQGVTRAAMHFFNTNPSG 853
                      :|.|.|:..::.||:...:::...:::  |..||:.:...:.|..:.||...|||
 Frog   977 TQQHTSLRLGVYSFLGVMQALSIFAASSTIIVGGVSV--SRQLHSRLLYSILRCPLSFFERTPSG 1039

  Fly   854 RILNRFSKDLGQVDEILPSVMMDVMQIFLAIVGIVVVLCIINVWYILATVFLVIVFYLLRVFYLS 918
            .:.|||:|::..:|..:|.|:|..:.:.|.|..|::|:.|......:|.:.|.::::.|:.||::
 Frog  1040 NLTNRFAKEMDIIDNTVPQVLMLFIIMMLTIAEILLVISIATPLAAVAFIPLGLLYFFLQRFYVA 1104

  Fly   919 TSRDVKRLEAVTRSPIYSHLSASLNGLATIRAFGAQKELIAEFDNYQDMHSSGYYMFLATSRAFG 983
            :||.:|||:||::||:|:|.:.||.|:..||||..|:..|.:.:...:|:...|:.....:|   
 Frog  1105 SSRQLKRLDAVSKSPLYTHFNESLQGVYVIRAFREQERFIQDNNMRLNMNQRFYFCSFVANR--- 1166

  Fly   984 YWLDCVC-------VVYIAVITLSFFLFSPEN--GGDVGLAITQAMGMTGMVQWGMRQSAELENT 1039
             ||...|       |..:|::.:.|    .:|  .|.||||:..::.:||:::..:..:.::|..
 Frog  1167 -WLSVRCDFLSNFIVFTVAIVGVLF----RDNITPGLVGLAVVNSLRLTGVLKEAVHVATDMETN 1226

  Fly  1040 MTAVERVVEYEDLEPEGDFESKPNKKPPKDWPEDGKIVFDDLSLKYFPDKAADYVLRSLNIAIEG 1104
            ..:||||.||.|.|||..:.| .|.....:||..|||.|.:..|:|.||  .|..|:::..:|:.
 Frog  1227 SVSVERVKEYCDAEPEAPWTS-DNASDLSNWPSKGKIEFQNYGLRYRPD--LDLALKNVTASIQQ 1288

  Fly  1105 CEKVGIVGRTGAGKSSLINALFR-LSYNEGAILIDRRDTNDLGLHDLRSKISIIPQEPVLFSGTM 1168
            .||||||||||||||||...||| |....|.|.||.:|.::||||:|||||:||||:|||||||:
 Frog  1289 GEKVGIVGRTGAGKSSLTLGLFRILEPATGRICIDEKDISELGLHELRSKITIIPQDPVLFSGTL 1353

  Fly  1169 RYNLDPFDEYSDAKLWESLEEVKLKQVVADLPSGLQSKISEGGTNFSVGQRQLVCLARAILRENR 1233
            |.||||||.|||..:|.:|:...||...:.||.||....:|||.|.|||||||||||||:||:.:
 Frog  1354 RMNLDPFDNYSDNDIWVALQLAHLKVFASGLPEGLSYICTEGGENLSVGQRQLVCLARALLRKTK 1418

  Fly  1234 ILVMDEATANVDPQTDALIQTTIRNKFKDCTVLTIAHRLHTVMDSDKVLVMDAGKAVEFGSPFEL 1298
            |||:|||||.||.:||.|||.|||.:|:|||::||||||:|:||..:|:|.|.|:.|||.:|..|
 Frog  1419 ILVLDEATAAVDLETDDLIQNTIRKEFEDCTIITIAHRLNTIMDYTRVVVFDKGEIVEFDTPATL 1483

  Fly  1299 LTTSEKKVFHSMVK 1312
            |  ..|.:|:||.:
 Frog  1484 L--ENKGLFYSMAR 1495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4562NP_001262747.1 CFTR_protein 12..1300 CDD:273530 462/1365 (34%)
ABC_membrane 98..367 CDD:294371 85/277 (31%)
ABCC_MRP_domain1 443..643 CDD:213217 90/201 (45%)
ABC_membrane 799..1027 CDD:294371 69/236 (29%)
ABCC_MRP_domain2 1074..1295 CDD:213211 131/221 (59%)
abcc6XP_002932264.3 MRP_assoc_pro 5..1499 CDD:188098 467/1379 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.