DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4562 and tap2

DIOPT Version :9

Sequence 1:NP_001262747.1 Gene:CG4562 / 42362 FlyBaseID:FBgn0038740 Length:1408 Species:Drosophila melanogaster
Sequence 2:XP_002942649.3 Gene:tap2 / 100489020 XenbaseID:XB-GENE-481680 Length:728 Species:Xenopus tropicalis


Alignment Length:695 Identity:154/695 - (22%)
Similarity:296/695 - (42%) Gaps:158/695 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   678 PDKKSLSRQNSKLRDRHGSISSMESAAESLAAESPMQTQEGRVEGRIGMKLYKKYFGANGYGLFI 742
            |:|.:....|||.|:|...|..:                              ||...:...|..
 Frog   136 PNKSAEGEANSKKRERENFIRLL------------------------------KYSIPDWLPLCG 170

  Fly   743 VFAFFCIGAQVLASGGDIFLSYWVNK------NGEAERD-----TFMARLRRAFPETRINADTDP 796
            .|.|.     .||..|::|:.|::.:      ....||:     :|||.                
 Frog   171 AFVFL-----TLALIGEMFIPYYMGRVIDILSTNYNEREFLRAMSFMAM---------------- 214

  Fly   797 VDIYYFTGINVSVIIFSLVRSMLFFYLAMRSSTTLHNTMFQGVTRAAMHFFNTNPSGRILNRFSK 861
                    .:::..||:..|..||.:...|.:..|...:|:.|.:..:.||....||.|.:|.:.
 Frog   215 --------FSITSSIFAGSRGGLFMFSLARLTQRLRLLLFRSVIKQEIAFFEATKSGDITSRLTN 271

  Fly   862 DLGQVDEILPSVMMDVMQIFLAIVGIVVVLCIINVWYILATVFL--VIVFYLLRVFYLSTSRDVK 924
            |..:|...:.:.:...:::.:..||:...:..:: |.:....|:  .:.:.:.:|:.......||
 Frog   272 DTARVSRSIAANVNITLRMLVKCVGVYSFMFSLS-WQLTLLTFISSPLTWIIQKVYNYYHQDLVK 335

  Fly   925 RL-EAVTRSPIYSHLSAS-LNGLATIRAFGAQKELIAEFDN-YQDMHSSGYYMFLATSRAFGYWL 986
            |: :::.||   |.|:.. :..:..:.:|.|::|....::| .|:.|      .|.|.|      
 Frog   336 RVQDSIARS---SELAKEIIESVRNVYSFAAEEEEAKRYENSLQETH------VLQTRR------ 385

  Fly   987 DCVCVVYIAVITLSFFLFSPENGGDVGLAIT-----QAMGMTGMVQWGMRQS------------- 1033
            |.|..:|:.|..|.          ::|..:|     |.:..:|.:..|...|             
 Frog   386 DFVTALYLLVTRLV----------NLGTQVTMLYYGQILIRSGFISSGKMVSFILYQMESDSYIR 440

  Fly  1034 ------AELENTMTAVERVVEYEDLEPE---------GDFESKPNKKPPKDWPEDGKIVFDDLSL 1083
                  :|:.:...|.|:|.:|.|.||:         |..:              |:..|.:::.
 Frog   441 TLVHMLSEITHAAGAAEKVFQYLDREPQVSASGCLCPGTLQ--------------GRFEFSNVTF 491

  Fly  1084 KYFPDKAADYVLRSLNIAIEGCEKVGIVGRTGAGKSSLINALFRLSYNEGA-ILIDRRDTNDLGL 1147
            .| |.:.....|::::..:.......:||.:|.||::.::.|.|....:|. ||:|.:...:...
 Frog   492 SY-PSRPEILALQNVSFTLPPGSVTALVGPSGGGKTTCVSLLERFYEPQGGNILLDGKPLKEYKH 555

  Fly  1148 HDLRSKISIIPQEPVLFSGTMRYNLDPFDEYS--DAKLWESLEEVKLKQVVADLPSGLQSKISEG 1210
            ..|.||::::.||||||:|::|.|:. :..|:  :.||..:..:.|.:..:..:.....:.:...
 Frog   556 EYLHSKVALVAQEPVLFAGSVRENIS-YGLYNIPEEKLKAAARKAKAEDFIEGMEKAYDTDVGNS 619

  Fly  1211 GTNFSVGQRQLVCLARAILRENRILVMDEATANVDPQTDALIQTTIRNKFKDCTVLTIAHRLHTV 1275
            |...|.||:|.|.||||:.|:.::|::|||::.:|.:|:..||.:::: .:|.::|.|||||.||
 Frog   620 GAQLSAGQKQRVALARALARKPKLLILDEASSCLDAETEHEIQKSLQS-IEDLSLLIIAHRLRTV 683

  Fly  1276 MDSDKVLVMDAGKAVEFGSPFELLTTSEKKVFHSMV----KQTGD 1316
            ..:|::||::||..||.|:..:|:....:.:..|:|    |..|:
 Frog   684 QKADQILVLEAGNLVEQGTHEKLVQKXRECITVSLVVALCKMVGN 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4562NP_001262747.1 CFTR_protein 12..1300 CDD:273530 150/673 (22%)
ABC_membrane 98..367 CDD:294371
ABCC_MRP_domain1 443..643 CDD:213217
ABC_membrane 799..1027 CDD:294371 47/237 (20%)
ABCC_MRP_domain2 1074..1295 CDD:213211 68/223 (30%)
tap2XP_002942649.3 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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