DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11407 and Acsm4

DIOPT Version :9

Sequence 1:NP_650831.1 Gene:CG11407 / 42354 FlyBaseID:FBgn0038733 Length:538 Species:Drosophila melanogaster
Sequence 2:NP_859046.1 Gene:Acsm4 / 353317 RGDID:727928 Length:580 Species:Rattus norvegicus


Alignment Length:557 Identity:129/557 - (23%)
Similarity:226/557 - (40%) Gaps:94/557 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PYRPASYYDADRKIW----SGDQLEYYFDPHLSIGEIIFNEMRRHPQLIAQISATENTILTRAEL 62
            |..||        :|    .||::::.|                  |.:..:|.....:||    
  Rat    72 PANPA--------LWWVNGKGDEVKWSF------------------QELGSLSRKAANVLT---- 106

  Fly    63 QANAMHIASYMRSLGLLQMDIVGIIARNTTHISAVAYACFFNGIAFHSLNISYEQSTIEKLFSIT 127
                       :..||.:.|.|.:|.........:..||...|:.|....|...:..|......:
  Rat   107 -----------KPCGLQRGDRVAVILPRIPEWWLINVACMRTGLVFMPGTIQLTRKDILYRLQAS 160

  Fly   128 RPNIIFCDGD---EFEKVRSATAQLDVKIITMRNHPSGSIRIDQVLSTPIEKNFQPVRLEQGNDQ 189
            :...|....:   ..:.:.|....|..|::...:...|.:...::|.:..|::   ..::.|:.:
  Rat   161 KAKCIVASEEVAPAVDSIASECPNLKTKLLVSPHRWDGWLSFQELLQSASEEH---NCVQTGSQE 222

  Fly   190 TLAILCSSGTTGIPKAVTITNSRQILNSSHS--------LTTNDVQYSHSTLDWITGLLTTVTSG 246
            .:||..:|||||.||..  .:|:..|...::        ||::|:.::.|...||...:    ..
  Rat   223 PMAIYFTSGTTGSPKMA--QHSQSSLGIGYALCGRYWLDLTSSDIMWNMSDTGWIKAAI----GS 281

  Fly   247 VFST---------KRIIADNIFDPEFFMRLVEEHQITWIIQAPAHMAMMVNSPSFTTSDLSSLRY 302
            ||||         .|:..   |:.:.|:..:..:.||.:..||....|:|.. .........||:
  Rat   282 VFSTWLRGACVFVHRMAQ---FNTDTFLDTLTSYPITTLCSAPTVYRMLVQQ-DLKRYQFKRLRH 342

  Fly   303 YLFGGSRASVETQHRIRSRLSKDCLHFAYGFTELGSMAALNLHFDEKPNSVGRLVAGLKLKVICE 367
            .|.||...:.|...:.:::...: |:..||.||:|.:.|.....:.||.|:|:.|....:::|.|
  Rat   343 CLTGGEPLNPEVLEQWKAQTGLE-LYEGYGQTEVGIICANRKGEEIKPGSMGKGVVPYDVQIIDE 406

  Fly   368 KGESLGPDEVGELCLWNGQ-----YWAGYYGNPEETHKMRDHHNWFHTGDLGYVDDDGFIYIVER 427
            .|..|...:.||:.|..|.     :::.|..|||:| ......|::.|||.|.:||||:::.|.|
  Rat   407 HGNILPSGKEGEIALRLGSDRPFCFFSEYVDNPEKT-DATIRRNFYITGDRGVMDDDGYLWFVGR 470

  Fly   428 KKDMLKFQNIMYYPNEIESVISKMPDVVEVCVFGVWNEINGDEATAAVV------KKRGSALTAQ 486
            ..|::........|.|:||.:.:.|.|||..|....:.|.|:...|.:|      ......||| 
  Rat   471 ADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTA- 534

  Fly   487 DIVDYVETHIDAKYKQLNGGAIIVEDLVRSPNGKTNR 523
            ::.|:|: :..|.||... ....|::|.::..||..|
  Rat   535 ELQDHVK-NSTAPYKYPR-KVEFVQELPKTITGKIKR 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11407NP_650831.1 CaiC 26..523 CDD:223395 121/527 (23%)
Firefly_Luc_like 47..522 CDD:213279 120/505 (24%)
Acsm4NP_859046.1 MACS_euk 48..577 CDD:341251 129/557 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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