DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and 4CL1

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_175579.1 Gene:4CL1 / 841593 AraportID:AT1G51680 Length:561 Species:Arabidopsis thaliana


Alignment Length:547 Identity:137/547 - (25%)
Similarity:245/547 - (44%) Gaps:34/547 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ENSYDNDQKIWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQISATEGTVLTRGELLANAMRLA 70
            :::.:|...|:..:....|....||:.:.||..:.........|:...|.|.|..::...:.::|
plant    15 QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIA 79

  Fly    71 SYMRSLGLLQSDIVGIIGRNTTHMLAVAYACFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCD 135
            :....||:.|:|:|.::..|....:....|..|.|....:.|..:....|.|..|.:...:|..:
plant    80 ANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITE 144

  Fly   136 GDEFEKVRSATAELDVKIVTMRNH-----PLDSIKIDEVVATPIEENFQPAKLEKGNDQTLAILC 195
            ....:|::....:..|.||.:.::     |...::..|:..:..|.:.....:|...|..:|:..
plant   145 ARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPY 209

  Fly   196 SSGTTGTPKAVTITNSRHILA---------GNYHLTTADVQYSHNTLDWITGLLTTITSGVFSTT 251
            ||||||.||.|.:|:...:.:         .|.:..:.||......:..|..|.:.:..|:....
plant   210 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 274

  Fly   252 RIIADNAFDPAFALRIIEEYKVTWTIQPPSSMALMINCPDFETCDMSSLRCYMFGGSRAALEVQK 316
            .|:....|:....|.:|:..|||.....|..:..:....:.|..|:||:|....|.:....|::.
plant   275 AILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELED 339

  Fly   317 GIRSRLSHDCLQFVYGFTELGAMATINCHFDE-----KTGSVGQLVNGLKMKIIN-DDGESLGPD 375
            .:.::..:..|...||.||.|.:..::..|.:     |:|:.|.:|...:|||:: |.|:||..:
plant   340 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRN 404

  Fly   376 EIGEVCIMNNQHWSGYYGNEVETRNMRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYY 440
            :.||:||..:|...||..|...|....|..||.|:||:|.:|.|..|:|:||.||::||:.....
plant   405 QPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVA 469

  Fly   441 PNDIESVISEMPQVAEVCVFGIWSNIFGDEAAAAVVKKLGSELEAQDVVDYVRSRTDSKYKQLN- 504
            |.::|:::...|.:.:|.|..:.....|:...|.|||...|||...||..:| |:....||::| 
plant   470 PAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFV-SKQVVFYKRINK 533

  Fly   505 -----------GGAVIVDDLQ-RSANG 519
                       .|.::..||: :.|||
plant   534 VFFTESIPKAPSGKILRKDLRAKLANG 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 134/527 (25%)
AFD_class_I 47..522 CDD:302604 130/506 (26%)
4CL1NP_175579.1 PLN02246 16..560 CDD:215137 135/544 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24096
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.