DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and acs-2

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_506869.1 Gene:acs-2 / 3565680 WormBaseID:WBGene00009221 Length:618 Species:Caenorhabditis elegans


Alignment Length:556 Identity:117/556 - (21%)
Similarity:228/556 - (41%) Gaps:112/556 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TPENSYDNDQKIWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQISATEGTVLTRGELLANAMR 68
            |.|...|.:..::|..|:.|.:       |..:|::|                           :
 Worm    68 TTERVPDKEFCVFSKYPIRKTY-------EEFYHDVR---------------------------Q 98

  Fly    69 LASYMRSLGLLQSDIVGIIGRNTTHMLAVAYACFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIF 133
            :|:.:.:|||.:.|.||:.|.|....:.:.|||.|.|:...::|..|..:.:..:.:.|...::|
 Worm    99 MAASLYTLGLEKGDRVGVWGPNYYEWVVLQYACAFAGVIQVNVNPHYLHEELRFVMRKTGMKVLF 163

  Fly   134 C-----DGDEFEKVRSATAEL---DVKIVTMRNHPLDSIKI-----DEVVATPIE---------- 175
            .     ..:....:..|..|:   ...:..:::|.:..::.     |:|   |:.          
 Worm   164 APKRHKHSNYVHTMLEAMPEMRRGQPGVGHIKSHDIPELRHIVLYGDDV---PVHGAWVYSDLIH 225

  Fly   176 --ENFQPAKLEKGN-----DQTLAILCSSGTTGTPKAVTIT----NSRHILAG--------NYHL 221
              .:.:.||||..:     |:.:.:..:|||||.||..|:|    |:....||        ::.:
 Worm   226 AAGSAERAKLEDMDRKLRPDEPVNMQFTSGTTGHPKGATLTHFGLNNNAYFAGIRLGWDREDHRI 290

  Fly   222 TTADVQYSHNTLDWITGLLTTITSGVFSTTRIIADNAFDPAFALRIIEEYKVTWTIQPPSSMALM 286
            ...:..|  :......|::..:..|   .|.:....::........|:..|.|.....|:....:
 Worm   291 CIPNPLY--HCFGCAVGVINAVNHG---QTVVFPSKSYHVPDIFEAIQNEKCTTMFGTPTMFIDV 350

  Fly   287 INCPDFETCDMSSLRCYMFGGSRAALEVQKGIRSRLSHDCLQFVYGFTELGAMATIN-CHFD--E 348
            :..|..:..|:||||..:.||:...:.:.:.:...:.......:||.||...:.|:: .|.|  |
 Worm   351 LKSPLMKQFDISSLRGGVIGGAPCPMALCEKMVKEMRMTDFSVIYGSTETSPLVTMSELHVDPFE 415

  Fly   349 KTGSVGQLVNGLKMKIINDDGESLGPDEIGEVCIMNNQHWS-------GYYGNEVETRNM---RD 403
            :..|||.::...::.|:::.|..:.....||:       ||       ||:.:..:| |:   ||
 Worm   416 RIKSVGSVMPHQELAIVDEFGVPVPTGAKGEL-------WSRGYSTMLGYWADHDKT-NLAITRD 472

  Fly   404 SLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIESVISEMPQVAEVCVFGIWSNIFG 468
            .  ||.|||...|:.||.:.|:.|.::|:.......||.:||..:.::..||:..|.|:..:.:|
 Worm   473 R--WYKSGDTATMNEDGTINIVGRTRDMIVKGGENVYPTEIEQFLHKLDYVADAHVVGVPDDRYG 535

  Fly   469 DEAAAAVVKKLGSELEAQDVVDYVR---SRTDSKYK 501
            :...|.|  :|..|.|.:...::::   .|..:.||
 Worm   536 ENICAWV--RLRVEDEGKITAEHIKKACKRGMAHYK 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 111/534 (21%)
AFD_class_I 47..522 CDD:302604 108/513 (21%)
acs-2NP_506869.1 PRK08315 46..609 CDD:236236 117/556 (21%)
FACL_like_2 244..595 CDD:213284 80/343 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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