DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and Acsm4

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_859046.1 Gene:Acsm4 / 353317 RGDID:727928 Length:580 Species:Rattus norvegicus


Alignment Length:608 Identity:135/608 - (22%)
Similarity:226/608 - (37%) Gaps:150/608 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQISATEGTVLTR-------------------- 59
            ||..:|..::|              .|.|||.|.::..:...:.|                    
  Rat    13 IWLAKPAGRHF--------------HRDPQLWAPLTLDDFEAINRCEKPLPKNFNFAADVLDQWS 63

  Fly    60 -----GELLANA----------------MRLASYMRS--------LGLLQSDIVGIIGRNTTHML 95
                 ||..||.                ..|.|..|.        .||.:.|.|.:|........
  Rat    64 LKEKSGERPANPALWWVNGKGDEVKWSFQELGSLSRKAANVLTKPCGLQRGDRVAVILPRIPEWW 128

  Fly    96 AVAYACFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGDEFEKVRSATAE---LDVKIVTMR 157
            .:..||...|:.|....|...|..|....:.::...|....:....|.|..:|   |..|:: :.
  Rat   129 LINVACMRTGLVFMPGTIQLTRKDILYRLQASKAKCIVASEEVAPAVDSIASECPNLKTKLL-VS 192

  Fly   158 NHPLDS-IKIDEVVATPIEENFQPAKLEKGNDQTLAILCSSGTTGTPKAVTITNSR----HILAG 217
            .|..|. :...|::.:..||:   ..::.|:.:.:||..:|||||:||....:.|.    :.|.|
  Rat   193 PHRWDGWLSFQELLQSASEEH---NCVQTGSQEPMAIYFTSGTTGSPKMAQHSQSSLGIGYALCG 254

  Fly   218 NY--HLTTADVQYSHNTLDWITGLLTTITSGVFST--------TRIIADNAFDPAFALRIIEEYK 272
            .|  .||::|:.::.:...||...:    ..||||        ...:|.  |:....|..:..|.
  Rat   255 RYWLDLTSSDIMWNMSDTGWIKAAI----GSVFSTWLRGACVFVHRMAQ--FNTDTFLDTLTSYP 313

  Fly   273 VTWTIQPPSSMALMINCPDFETCDMSSLRCYMFGG------------SRAALEVQKGIRSRLSHD 325
            :|.....|:...:::. .|.:......||..:.||            ::..||:.:|        
  Rat   314 ITTLCSAPTVYRMLVQ-QDLKRYQFKRLRHCLTGGEPLNPEVLEQWKAQTGLELYEG-------- 369

  Fly   326 CLQFVYGFTELGAMATINCHFDEKTGSVGQLVNGLKMKIINDDGESLGPDEIGEVCIMNNQ---- 386
                 ||.||:|.:.......:.|.||:|:.|....::||::.|..|...:.||:.:....    
  Rat   370 -----YGQTEVGIICANRKGEEIKPGSMGKGVVPYDVQIIDEHGNILPSGKEGEIALRLGSDRPF 429

  Fly   387 -HWSGYYGNEVET-----RNMRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIE 445
             .:|.|..|..:|     ||      :|.:||.|.||.||:|:.:.|..:::........|.::|
  Rat   430 CFFSEYVDNPEKTDATIRRN------FYITGDRGVMDDDGYLWFVGRADDVIISSGYRIGPFEVE 488

  Fly   446 SVISEMPQVAEVCVFGIWSNIFGDEAAAAVV----------KKLGSELEAQDVVDYVRSRTDSKY 500
            |.:.|.|.|.|..|......|.|:...|.:|          :||.:||:     |:|::.| :.|
  Rat   489 SALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQ-----DHVKNST-APY 547

  Fly   501 KQLNGGAVIVDDLQRSANGKTNR 523
            |... ....|.:|.::..||..|
  Rat   548 KYPR-KVEFVQELPKTITGKIKR 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 130/595 (22%)
AFD_class_I 47..522 CDD:302604 126/573 (22%)
Acsm4NP_859046.1 MACS_euk 48..577 CDD:341251 125/559 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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