DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and hll

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_609696.1 Gene:hll / 34822 FlyBaseID:FBgn0286723 Length:681 Species:Drosophila melanogaster


Alignment Length:584 Identity:127/584 - (21%)
Similarity:209/584 - (35%) Gaps:156/584 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PDLSIGEIIFHEMRRHPQLTAQISATEG------TVLTRGELLANAMRLASYMRSLGLLQSDIVG 85
            |..:|.|.......::..|.|.:..|.|      |.||.||......:.|..:.|:|:.:...||
  Fly    34 PPQTIPEFFKESCEKYSDLPALVWETPGSGNDGWTTLTFGEYQERVEQAALMLLSVGVEERSSVG 98

  Fly    86 IIGRNTTHMLAVAYACFFNGIAFHSLNITYDRDTIEKIYKV--TRPSIIFC---DGDEFEKVRSA 145
            |:..|........:.....|.....:   |..::.|.::.|  |..|.: |   |..:..|:|:.
  Fly    99 ILAFNCPEWFFAEFGALRAGAVVAGV---YPSNSAEAVHHVLATGESSV-CVVDDAQQMAKLRAI 159

  Fly   146 TAELD-VKIVTMRNHPLDSI-----------KIDE-VVATPIEENFQPAKLEKGNDQTLAILCSS 197
            ...|. :|.|...:.|.::.           |:.| ..::.::|.....:.....::...::.:|
  Fly   160 KERLPRLKAVIQLHGPFEAFVDHEPGYFSWQKLQEQTFSSELKEELLARESRIRANECAMLIFTS 224

  Fly   198 GTTGTPKAVTITNSR-----------------------------HILA-------GNYH---LTT 223
            ||.|.||||.:::..                             |:.|       |..|   :|.
  Fly   225 GTVGMPKAVMLSHDNLVFDTKSAAAHMQDIQVGKESFVSYLPLSHVAAQIFDVFLGLSHAGCVTF 289

  Fly   224 ADVQYSHNTLDWITGLLTTITSGVFSTTRII---------ADNAFDP------AFALRIIEEYKV 273
            ||......||  |........:.:|...|:.         |:....|      |.|...:.|::.
  Fly   290 ADKDALKGTL--IKTFRKARPTKMFGVPRVFEKLQERLVAAEAKARPYSRLLLARARAAVAEHQT 352

  Fly   274 T---------------W----TIQPPSSMALMINCPDFETCDMSSLRCYMFGGSRAALEVQK--- 316
            |               |    .::|...|..:.||           |.:..||:..:.|:::   
  Fly   353 TLMAGKSPSIYGNAKYWLACRVVKPIREMIGVDNC-----------RVFFTGGAPTSEELKQFFL 406

  Fly   317 GIRSRLSHDCLQFVYGFTELGAMATINCHFDEKTGSVGQLVNGLKMKIINDD--GESLGPDEIGE 379
            |:...|. :|    ||.:|.....|:|... ....|.||...|:.:||...|  |:       ||
  Fly   407 GLDIALG-EC----YGMSETSGAITLNVDI-SNLYSAGQACEGVTLKIHEPDCNGQ-------GE 458

  Fly   380 VCIMNNQHWSGYYGNEVETRNMRDSLGWYHSGDLGYMDRDGFLYIMDRKKEML---KYQNIMYYP 441
            :.:.....:.||.|...:|.......||.|||||||:|..|.|.|..|.||::   ..:||.  |
  Fly   459 ILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKELIITAGGENIP--P 521

  Fly   442 NDIESVI-SEMPQVAEVCVFGIWSNIFGDEAAAAVV---------KKLGSELEA--QDVVDYVR 493
            ..||.:| .|:|.|:.|.       :.||......|         .|.|..|:|  ::.::::|
  Fly   522 VHIEELIKKELPCVSNVL-------LIGDHRKYLTVLLSLKTKCDAKTGIPLDALREETIEWLR 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 127/584 (22%)
AFD_class_I 47..522 CDD:302604 123/564 (22%)
hllNP_609696.1 AFD_class_I 62..680 CDD:388389 120/556 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452223
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24096
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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