DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and LOC316124

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:XP_006244385.1 Gene:LOC316124 / 316124 RGDID:1595856 Length:705 Species:Rattus norvegicus


Alignment Length:541 Identity:106/541 - (19%)
Similarity:195/541 - (36%) Gaps:133/541 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 DPDLSIGEIIFHEMRRHPQLTAQISATEGT--VLTRGELLANAMRLASYMRSLGLLQSDIVGIIG 88
            :|.:::.::|.....::....|..|..:.:  |||..|......|.|.....:||.:...|||:|
  Rat    70 EPPVTVPDLIMSAATKYSHYLAIGSKYKKSWQVLTYIEYYEACRRAAKAFLKVGLERFHGVGIMG 134

  Fly    89 RNTTH-MLAVAYACFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGD-EFEKVRSATAEL-D 150
            .|::. ::|...|....||:...|:....: ..:.|.:.:...|...|.| :.:||......| .
  Rat   135 INSSEWVIASIGAIMAGGISVGILSSNSPK-ACQIIAETSEMDIFVVDNDRQLQKVNQIQGYLKH 198

  Fly   151 VKIVTMRNHPLDSI--------------------KIDEVVATPIEENFQPAKLEKGNDQTLAILC 195
            :|.:......:..:                    |:|:::           ..:|.| |..|::.
  Rat   199 LKAIIQYREDIQEVQPNLYSWKGFLDLADGISDEKLDQII-----------DAQKPN-QCCALVY 251

  Fly   196 SSGTTGTPKAVTIT---------------------NSRHILAGNYHLTTADVQYSHNTLD-WI-- 236
            :.||||.|||:.::                     :.:.||.....|..|.:|    .|| |:  
  Rat   252 NQGTTGNPKAIMLSHDNITWTTAATVQSLGYKCPPHGQEILVSYLPLCFAGIQ----ILDVWVAI 312

  Fly   237 ----TGLLTTITSGVFSTTRIIADNAFDPAFALRIIEEYKVT--------WTIQPPSSMALMINC 289
                |....::.||.:|....::..    .|.:.::.|.:.|        |.....|.....::.
  Rat   313 SVAGTVYFPSLESGKWSGLPRVSGT----GFLMELLREVQPTTFCGIPWVWDRMLDSLKTKHLDS 373

  Fly   290 PDFE--------TCDMSSLRCYMFGGSRAALEVQKGIRSRLS----------HDCLQF------- 329
            ..|.        ...:|:.:..|.||....|..  |:..||:          :.|.||       
  Rat   374 TAFRRKIDRWAMRMGLSTNKRQMMGGIHQPLCF--GLAKRLTFKPAKKFLGLNHCEQFLNVGMGL 436

  Fly   330 -----------------VYGFTELGAMATINCHFDEKTGSVGQLVNGLKMKIINDDGESLGPDEI 377
                             :||.:|...:.|::.....:..|.|:.:.....|:     |....|.:
  Rat   437 PRSTLDFFLSMNIPILELYGLSECTGLHTLSSLQAYRILSSGKALPKTHTKV-----EKENQDGV 496

  Fly   378 GEVCIMNNQHWSGYYGNEVETRNMRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQN-IMYYP 441
            |.:||.....:.||..::..|....|:.||.|:.|||::|.|.:||:.....::::..: .|..|
  Rat   497 GNLCIWGRHVFMGYLRDKHSTERKVDNHGWLHTNDLGFLDFDKYLYVTGNTNDLIRLNSGEMVNP 561

  Fly   442 NDIES-VISEMPQVAEVCVFG 461
            ..||. |.:.:|.|....:.|
  Rat   562 IPIEERVRTRIPLVRYAMLVG 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 106/541 (20%)
AFD_class_I 47..522 CDD:302604 104/520 (20%)
LOC316124XP_006244385.1 FAA1 74..701 CDD:223953 105/537 (20%)
ACSBG_like 95..700 CDD:213299 102/516 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342987
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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