DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6300 and Acsm4

DIOPT Version :9

Sequence 1:NP_650828.1 Gene:CG6300 / 42351 FlyBaseID:FBgn0038730 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_848501.1 Gene:Acsm4 / 233801 MGIID:2681844 Length:580 Species:Mus musculus


Alignment Length:607 Identity:133/607 - (21%)
Similarity:221/607 - (36%) Gaps:148/607 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 IWSGEPVVKYFDPDLSIGEIIFHEMRRHPQLTAQISATEGTVLTR-------------------- 59
            ||..:|..::|              .|..||.|.::..:...:.|                    
Mouse    13 IWLAKPAGRHF--------------HRDSQLWAPLTLDDFEAINRCEKPLPKNFNFAADVLDQWS 63

  Fly    60 -----GELLANA----------------MRLASYMRS--------LGLLQSDIVGIIGRNTTHML 95
                 ||..||.                ..|.|..|.        .||.:.|.|.:|........
Mouse    64 LKEKSGERPANPALWWVNGKGDEVKWSFQELGSLSRKAANVLTKPCGLQRGDRVAVILPRIPEWW 128

  Fly    96 AVAYACFFNGIAFHSLNITYDRDTIEKIYKVTRPSIIFCDGDEFEKVRSATAE---LDVKIVTMR 157
            .:..||...|:.|....|...|..|....:.::...|....:....|.|..:|   |..|::...
Mouse   129 LINVACMRTGLVFMPGTIQLTRKDILYRLQASKAKCIVASEEVAPAVDSIVSECPSLKTKLLVSP 193

  Fly   158 NHPLDSIKIDEVVATPIEENFQPAKLEKGNDQTLAILCSSGTTGTPKAVTITNSR----HILAGN 218
            :|....:...|::.:..||:   ..:|.|:.:.:||..:|||||:||....:...    :.|.|.
Mouse   194 HHWDGWLNFQELLQSASEEH---NCVETGSQEPMAIYFTSGTTGSPKMAQHSQGSLGIGYTLCGR 255

  Fly   219 Y--HLTTADVQYSHNTLDWITGLLTTITSGVFST--------TRIIADNAFDPAFALRIIEEYKV 273
            |  .||::|:.::.:...||...:    ..||||        ...:|.  ||....|..:..|.:
Mouse   256 YWLDLTSSDIMWNMSDTGWIKAAI----GSVFSTWLRGACVFVHRMAQ--FDTDIFLDTLTTYPI 314

  Fly   274 TWTIQPPSSMALMINCPDFETCDMSSLRCYMFGGS------------RAALEVQKGIRSRLSHDC 326
            |.....|:...:::. .|.:......||..:.||.            :..||:.:|         
Mouse   315 TTLCSAPTVYRMLVQ-KDLKRYQFKRLRHCLTGGEPLNPEVLEQWKMQTGLELYEG--------- 369

  Fly   327 LQFVYGFTELGAMATINCHFDEKTGSVGQLVNGLKMKIINDDGESLGPDEIGEVCIMNNQ----- 386
                ||.||:|.:.........|.||:|:.|....::||:::|..|...:.||:.:....     
Mouse   370 ----YGQTEVGIICANRKGEAIKPGSMGKGVVPYDVQIIDENGNILPSGKEGEIALRLKSDRPFC 430

  Fly   387 HWSGYYGNEVET-----RNMRDSLGWYHSGDLGYMDRDGFLYIMDRKKEMLKYQNIMYYPNDIES 446
            .:|.|..|..:|     ||      :|.:||.|.||.||:.:.:.|..:::........|.::||
Mouse   431 FFSEYVDNPEKTDATIRRN------FYVTGDRGVMDDDGYFWFVGRADDVIISSGYRIGPFEVES 489

  Fly   447 VISEMPQVAEVCVFGIWSNIFGDEAAAAVV----------KKLGSELEAQDVVDYVRSRTDSKYK 501
            .:.|.|.|.|..|......|.|:...|.:|          :||.:||:     |:|::.| :.||
Mouse   490 ALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPYKCSNREKLTAELQ-----DHVKNST-APYK 548

  Fly   502 QLNGGAVIVDDLQRSANGKTNR 523
            ... ....|.:|.::..||..|
Mouse   549 YPR-KVEFVQELPKTITGKIKR 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6300NP_650828.1 CaiC 26..523 CDD:223395 128/594 (22%)
AFD_class_I 47..522 CDD:302604 125/572 (22%)
Acsm4NP_848501.1 MACS_euk 48..577 CDD:213294 124/558 (22%)
Acs 49..576 CDD:223442 124/557 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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