DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluClalpha and glrb

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001072255.1 Gene:glrb / 779708 XenbaseID:XB-GENE-1011734 Length:497 Species:Xenopus tropicalis


Alignment Length:482 Identity:164/482 - (34%)
Similarity:265/482 - (54%) Gaps:63/482 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LCSASLA--NNAKINFREKEKKVLDQILGAGKYDARIRPS--GINGTDGPAVVRVNIFVRSISKI 76
            ||.:.|:  :.|::. ......:|:::|.:  ||.|:||:  ||     |..|.||||:.|...|
 Frog    38 LCPSQLSAEDLARVP-ANSTSNILNRLLVS--YDPRVRPNFKGI-----PVDVVVNIFINSFGSI 94

  Fly    77 DDVTMEYSVQLTFREQWTDERLKF-DDIQGRLKYLTL--TEANRVWMPDLFFSNEKEGHFHNIIM 138
            .:.||:|.|.:..|::|.|.|||. :|.:|. ..||:  |....:|.|||||:|||..:||::..
 Frog    95 QETTMDYRVNIFLRQRWNDPRLKLPNDFRGS-DALTVDPTMFKCLWKPDLFFANEKNANFHDVTQ 158

  Fly   139 PNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQV 203
            .|:.:.||.:|.||.|:|:|:||:||::|.|:|:|.|.|.:::.|:|:||:||.|:|:.|||||:
 Frog   159 ENILLFIFRDGDVLLSMRLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQM 223

  Fly   204 VKNLHLPRFTLEKFLTDYCNSK---TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVS 265
            .| :.||:|.::....:|.|..   ..||.|:|::|....:|:..:|::.:|.|..::|::||:|
 Frog   224 EK-IALPQFDIKTEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLS 287

  Fly   266 FWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFA---- 326
            ||::..|..|||.||:.::|::|::.:.:...||.|||.||||||...||.|.|.:|:|:|    
 Frog   288 FWINPDASAARVPLGIFSVLSLASECTTLAQELPKVSYVKAIDVWLIACLLFGFASLVEYAVVQV 352

  Fly   327 LVNYASRSGSNKANMHK--------ENMKKKR------RDLEQASLD-----------AASDLLD 366
            |:|...|..:.||.:.|        .|..||.      ..:..::|.           :.|||..
 Frog   353 LLNSPKRIEAEKAKIAKAEQAEGKGANAAKKNTVNGTGTPIHISTLQVGENRCKKVCTSKSDLRS 417

  Fly   367 TDSNATFAMASQFARGGGQQKPLVRHP--GDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRS 429
            .|.:...::...|        .|..:.  |.|:.:...|. :...:..|:|...|..:   |:.:
 Frog   418 NDFSIVGSLPRDF--------ELSNYDCYGKPIEVNNGLG-KSQAKNNKKPPPAKPVI---PSEA 470

  Fly   430 KRIDVISRITFPLVFALFNLVYWSTYL 456
            ||||:.||..||..|..||::||..||
 Frog   471 KRIDLYSRALFPFCFLFFNVIYWLVYL 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 162/479 (34%)
glrbNP_001072255.1 LIC 38..496 CDD:273305 162/479 (34%)
LGIC_ECD_GlyR_beta 79..265 CDD:349811 77/187 (41%)
Cys-loop 183..197 CDD:349811 7/13 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 174 1.000 Domainoid score I3617
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 332 1.000 Inparanoid score I2384
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276914at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm49352
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X271
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.070

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