DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and gabrr2b

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_697486.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:464 Species:Danio rerio


Alignment Length:494 Identity:166/494 - (33%)
Similarity:248/494 - (50%) Gaps:95/494 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LCSASLANNAKINFREKE-----------KKVLDQ----------ILGAGKYDARIRPSGINGTD 59
            ||:.:.....|.:.|...           ||:||:          :|....:|..:||:    ..
Zfish    13 LCAIAEGGKMKYSLRRTNPQNHKHGTPLFKKMLDETKTHAVKSEHLLSVEDHDFTMRPA----FA 73

  Fly    60 GPAV-VRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDD-------IQGRLKYLTLTEAN 116
            |||| |.|::.|.|:..|.:|.|::::.|..|..|.||||.|..       ..|||       ..
Zfish    74 GPAVPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSKHNKSMTFDGRL-------VK 131

  Fly   117 RVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRM 181
            ::|:||:||.:.|....|:....|:.||::|:|.||||:|:::|.||.|:...:|||.|.|:|.:
Zfish   132 KIWVPDVFFVHSKRSFIHDTTTENIMIRVYPDGHVLYSLRVTVTSACNMDFSRFPLDTQTCTLEL 196

  Fly   182 ASYGWTTNDLVFLWKEGD-PVQVVKNLHLPRFTLEKFLTDYCNSK----TNTGEYSCLKVDLLFK 241
            .||.:|..||:..||.|| .:.....:.|.:|.::||.|   .|:    ::||.|:.|.::...:
Zfish   197 ESYAYTDEDLMLYWKSGDESLSTDDKISLSQFLIQKFHT---TSRLAFYSSTGWYNRLYINFTLR 258

  Fly   242 REFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKA 306
            |...::|:|.|.|..::|::||||||:|:.|||||||||:||:|||:|..:|:|||:|.|||.||
Zfish   259 RHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKA 323

  Fly   307 IDVWTGVCLTFVFGALLEFALVNYAS--RSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTDS 369
            :|::..|...|||.::||:|.|||.:  ..|::             |.|.|.:|....|:   .|
Zfish   324 VDIYLWVSFVFVFLSVLEYAAVNYLTTVHDGTD-------------RKLRQKTLPGTCDI---SS 372

  Fly   370 NATFAMASQFAR-------GGGQQKPLVRHPG---DPLALEKRLQCEVHMQAPKRPNCCKTWLSK 424
            ..|..:...:.|       |..|.......|.   ||:|:...:..|| ..|.||          
Zfish   373 MRTMMLNEAYGRPDSNGLAGYTQTTVSSEEPAEKQDPIAVCLSIGPEV-KGAKKR---------- 426

  Fly   425 FPTRSKR-------IDVISRITFPLVFALFNLVYWSTYL 456
             ..|..|       ||..||:.||..|..|||:|||.||
Zfish   427 -TLRGLRIIQNTHAIDAYSRMIFPGAFIFFNLIYWSVYL 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 164/491 (33%)
gabrr2bXP_697486.2 LIC 55..463 CDD:273305 156/449 (35%)
Neur_chan_LBD 56..261 CDD:280998 73/218 (33%)
Neur_chan_memb 268..460 CDD:280999 78/219 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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