DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluClalpha and gabrz

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001108214.2 Gene:gabrz / 561738 ZFINID:ZDB-GENE-080303-26 Length:447 Species:Danio rerio


Alignment Length:465 Identity:160/465 - (34%)
Similarity:248/465 - (53%) Gaps:48/465 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ILYFASLCSASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSIS 74
            :|:.:.:...|:||..:|    ....:...:.|..||   :||...|   ||..|.:::.:.||.
Zfish    13 LLFISRIMDGSVANTEEI----LPPTIQKLMKGYNKY---LRPFFGN---GPVTVGMSLDIASID 67

  Fly    75 KIDDVTMEYSVQLTFREQWTDERLKFD-----DIQGRLKYLTLTEANRVWMPDLFFSNEKEGHFH 134
            .|.::.|:|:..:..|::||||||.||     .:.|||..|       :|:||.|..:.|:...|
Zfish    68 TISEINMDYTATIFLRQRWTDERLCFDGNKSLSLDGRLVEL-------LWVPDTFIVDSKKSFLH 125

  Fly   135 NIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGD 199
            :|.:.|..|||||||:|||::||:.|:||.|:|..||:|||.|.|::.|:|:...|:||.|..|:
Zfish   126 DITVENRLIRIFPNGTVLYALRITTTVACSMDLTKYPMDRQTCMLQLESWGYNVKDVVFYWTRGN 190

  Fly   200 -PVQVVKNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSW 263
             .|..:.:|.|.::|||...|....:...||.|..|......||...|::::.|:|...||::||
Zfish   191 QSVSGLDHLQLAQYTLEDHYTSESEAVYETGNYPKLIFHFKLKRSILYFILETYVPSSALVVLSW 255

  Fly   264 VSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVS-YTKAIDVWTGVCLTFVFGALLEFAL 327
            ||||:.|.:||||:.:||||:|||.|...|...|||..: :.|||||:.|:|.:|:||||:|:|:
Zfish   256 VSFWISQSSVPARICIGVTTVLTMTTLMMGARTSLPNANCFIKAIDVYLGICFSFIFGALIEYAV 320

  Fly   328 VNYASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTDSNATFAMASQ--FARGGGQQKPLV 390
            .::.:....|.||.:....:.:.|:.|...:     :....|:|..|...:  .:|.|....|. 
Zfish   321 AHFCTLHQPNAANAYMYGQEMQEREDEMNGI-----VTSFGSHALRARKREEMLSRMGSVNNPT- 379

  Fly   391 RHPG----DPLALEKRLQCEVHMQAPKR----PNCCKTWLSKFPTRSKRIDVISRITFPLVFALF 447
              |.    |..:.:.:.:|...|...:|    ..|||.      .....||..||:||||.|.:.
Zfish   380 --PSESKEDVSSSQPQTRCTKCMSRARRIIRCLYCCKV------ENPHYIDNYSRLTFPLSFVII 436

  Fly   448 NLVYWSTYLF 457
            ||:||:.||:
Zfish   437 NLLYWTYYLY 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 158/461 (34%)
gabrzNP_001108214.2 LIC 26..444 CDD:273305 155/448 (35%)
LGIC_ECD_GABAAR_pi 54..235 CDD:349805 71/187 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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