DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluClalpha and LOC561083

DIOPT Version :9

Sequence 1:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_009295726.1 Gene:LOC561083 / 561083 -ID:- Length:471 Species:Danio rerio


Alignment Length:513 Identity:160/513 - (31%)
Similarity:249/513 - (48%) Gaps:122/513 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FWAILYFASLCSASLANNAKINFREKEKKV------------------------------LDQIL 41
            ||.:         :|.||..:| |:|.|.:                              .:|:|
Zfish    16 FWPV---------ALVNNHYLN-RKKNKDIYLVDHAKHRFRGRIDYKLKRKDSTKSLLIKTEQLL 70

  Fly    42 GAGKYDARIRPSGINGTDGPAV-VRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDD--- 102
            ....:|..:||:    ..|.|: |.:::.|.||..|.:|.|::::.|..|..|.||||.|..   
Zfish    71 RIEDHDFAMRPA----FGGSAIPVGIDVQVESIDSISEVNMDFTMTLYLRHYWKDERLAFPSSNN 131

  Fly   103 ----IQGRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLAC 163
                ..|||       ..::|.||:||.:.|....|:..|.|:.:|::|:|::|||:||::|..|
Zfish   132 LSRTFDGRL-------VKKIWKPDVFFVHSKRSFIHDTTMENIMLRVYPDGNILYSVRITVTSLC 189

  Fly   164 PMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKF-----LTDYCN 223
            .|:...:|||.|.|||.:.||.:..|||:..||.|:.......:.|.:|.:|:|     |..|  
Zfish   190 SMDFSRFPLDTQNCSLELESYAYNENDLMLYWKNGNDSLRTDEIALSQFFIEEFHVSHGLALY-- 252

  Fly   224 SKTNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMA 288
              ::||.|:.|.::.:.:|...::::|.|.|..::|::||||||:|:.|||||||||:||:|||:
Zfish   253 --SSTGWYNRLYINFILRRHIFFFMLQTYFPTMLMVVLSWVSFWIDRRAVPARVSLGITTVLTMS 315

  Fly   289 TQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMKKKR--- 350
            |..:|::.|:|.|||.||:||:......|||..::|:|.|||.:.         ||.|||.:   
Zfish   316 TIITGVSTSMPQVSYVKAVDVYLWTSFLFVFLTVIEYAAVNYFTT---------KEEMKKLKQLK 371

  Fly   351 ------------------RDLEQASLDAASDLLDTDSNATFAMASQFARGGGQQKPLVRHPGDPL 397
                              :|:|.:|....|||     ||...::|:.:.....          |.
Zfish   372 ISEYDASQAMAFDGCFHDQDIELSSFPRLSDL-----NADTCVSSRNSTTADL----------PP 421

  Fly   398 ALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVISRITFPLVFALFNLVYWSTY 455
            .|..||         :|....:..::.....|.:||..|||.|||.:.||||:|||.|
Zfish   422 VLGTRL---------RRRRSIRQSVNHIINNSYKIDSYSRICFPLAYVLFNLIYWSIY 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 159/511 (31%)
LOC561083XP_009295726.1 Neur_chan_LBD 67..470 CDD:332142 150/450 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.